<feed xmlns='http://www.w3.org/2005/Atom'>
<title>ports/science/silo, branch main</title>
<subtitle>FreeBSD ports tree</subtitle>
<link rel='alternate' type='text/html' href='http://cgit.freebsd.org/ports/'/>
<entry>
<title>science/silo: update 4.11-68 → 4.12.0</title>
<updated>2025-11-23T20:09:01+00:00</updated>
<author>
<name>Yuri Victorovich</name>
<email>yuri@FreeBSD.org</email>
</author>
<published>2025-11-23T19:10:23+00:00</published>
<link rel='alternate' type='text/html' href='http://cgit.freebsd.org/ports/commit/?id=f04154321aa10deb15b9f712159e08a52c29f30b'/>
<id>f04154321aa10deb15b9f712159e08a52c29f30b</id>
<content type='text'>
Reported by:	portscout
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
Reported by:	portscout
</pre>
</div>
</content>
</entry>
<entry>
<title>*: Bump PORTREVISIONs for math/mpc update to 1.3.1</title>
<updated>2023-04-23T09:09:58+00:00</updated>
<author>
<name>Gerald Pfeifer</name>
<email>gerald@FreeBSD.org</email>
</author>
<published>2023-04-23T09:09:58+00:00</published>
<link rel='alternate' type='text/html' href='http://cgit.freebsd.org/ports/commit/?id=8d3e020ed032a8db00208994d0db646de7dc6f5b'/>
<id>8d3e020ed032a8db00208994d0db646de7dc6f5b</id>
<content type='text'>
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
</pre>
</div>
</content>
</entry>
<entry>
<title>science/silo: fix build with clang 15</title>
<updated>2023-01-10T18:26:30+00:00</updated>
<author>
<name>Dimitry Andric</name>
<email>dim@FreeBSD.org</email>
</author>
<published>2023-01-10T18:15:27+00:00</published>
<link rel='alternate' type='text/html' href='http://cgit.freebsd.org/ports/commit/?id=85723e5e46f7acb9f4403aace3b5192dab15c30e'/>
<id>85723e5e46f7acb9f4403aace3b5192dab15c30e</id>
<content type='text'>
During an exp-run for llvm 15 (see bug 265425), it turned out that
science/silo failed to build with clang 15:

  /wrkdirs/usr/ports/science/silo/work/Silo-4.11-68-g819658e/src/hdf5_drv/silo_hdf5.c:1869:13: error: incompatible integer to pointer conversion passing 'char' to parameter of type 'const char *'; take the address with &amp; [-Wint-conversion]
              DB_OBJ_CASE(DB_CURVE, DBcurve_mt, npts?1:1, yvarname)
              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /wrkdirs/usr/ports/science/silo/work/Silo-4.11-68-g819658e/src/hdf5_drv/silo_hdf5.c:1812:36: note: expanded from macro 'DB_OBJ_CASE'
              (*dsnames)[i] = strdup(m.MEMNAME[i]);                \
                              ~~~~~~~^~~~~~~~~~~~~
  /wrkdirs/usr/ports/science/silo/work/Silo-4.11-68-g819658e/src/silo/silo_private.h:939:35: note: expanded from macro 'strdup'
  #define strdup(s) _db_safe_strdup(s)
                                    ^
  /wrkdirs/usr/ports/science/silo/work/.build/include/silo.h:2214:68: note: passing argument to parameter here
  SILO_API extern char *                 _db_safe_strdup(const char *);
                                                                     ^

This turns out to be a bug in silo, which I reported upstream in
https://github.com/LLNL/Silo/issues/296, and which was fixed in
https://github.com/LLNL/Silo/commit/be29ddf.

PR:		268864
Approved by:	yuri (maintainer)
MFH:		2023Q1
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
During an exp-run for llvm 15 (see bug 265425), it turned out that
science/silo failed to build with clang 15:

  /wrkdirs/usr/ports/science/silo/work/Silo-4.11-68-g819658e/src/hdf5_drv/silo_hdf5.c:1869:13: error: incompatible integer to pointer conversion passing 'char' to parameter of type 'const char *'; take the address with &amp; [-Wint-conversion]
              DB_OBJ_CASE(DB_CURVE, DBcurve_mt, npts?1:1, yvarname)
              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /wrkdirs/usr/ports/science/silo/work/Silo-4.11-68-g819658e/src/hdf5_drv/silo_hdf5.c:1812:36: note: expanded from macro 'DB_OBJ_CASE'
              (*dsnames)[i] = strdup(m.MEMNAME[i]);                \
                              ~~~~~~~^~~~~~~~~~~~~
  /wrkdirs/usr/ports/science/silo/work/Silo-4.11-68-g819658e/src/silo/silo_private.h:939:35: note: expanded from macro 'strdup'
  #define strdup(s) _db_safe_strdup(s)
                                    ^
  /wrkdirs/usr/ports/science/silo/work/.build/include/silo.h:2214:68: note: passing argument to parameter here
  SILO_API extern char *                 _db_safe_strdup(const char *);
                                                                     ^

This turns out to be a bug in silo, which I reported upstream in
https://github.com/LLNL/Silo/issues/296, and which was fixed in
https://github.com/LLNL/Silo/commit/be29ddf.

PR:		268864
Approved by:	yuri (maintainer)
MFH:		2023Q1
</pre>
</div>
</content>
</entry>
<entry>
<title>science/silo: Update 4.10.2 -&gt; 4.11-68</title>
<updated>2022-12-04T02:05:40+00:00</updated>
<author>
<name>Yuri Victorovich</name>
<email>yuri@FreeBSD.org</email>
</author>
<published>2022-12-04T02:03:17+00:00</published>
<link rel='alternate' type='text/html' href='http://cgit.freebsd.org/ports/commit/?id=48e1947fc619d5ad7eb90783613d748f4bd6fa90'/>
<id>48e1947fc619d5ad7eb90783613d748f4bd6fa90</id>
<content type='text'>
Taking maintainership on request of the maintainer.

PR:		268134
Approved by:	dbaio@ (maintainer)
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
Taking maintainership on request of the maintainer.

PR:		268134
Approved by:	dbaio@ (maintainer)
</pre>
</div>
</content>
</entry>
<entry>
<title>Remove WWW entries moved into port Makefiles</title>
<updated>2022-09-07T21:58:51+00:00</updated>
<author>
<name>Stefan Eßer</name>
<email>se@FreeBSD.org</email>
</author>
<published>2022-09-07T21:30:14+00:00</published>
<link rel='alternate' type='text/html' href='http://cgit.freebsd.org/ports/commit/?id=fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4'/>
<id>fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4</id>
<content type='text'>
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
</pre>
</div>
</content>
</entry>
<entry>
<title>Add WWW entries to port Makefiles</title>
<updated>2022-09-07T21:10:59+00:00</updated>
<author>
<name>Stefan Eßer</name>
<email>se@FreeBSD.org</email>
</author>
<published>2022-09-07T21:06:12+00:00</published>
<link rel='alternate' type='text/html' href='http://cgit.freebsd.org/ports/commit/?id=b7f05445c00f2625aa19b4154ebcbce5ed2daa52'/>
<id>b7f05445c00f2625aa19b4154ebcbce5ed2daa52</id>
<content type='text'>
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
</pre>
</div>
</content>
</entry>
<entry>
<title>science/hdf5: bump PORTREVISION of consumers</title>
<updated>2022-07-20T14:35:24+00:00</updated>
<author>
<name>Tobias C. Berner</name>
<email>tcberner@FreeBSD.org</email>
</author>
<published>2022-07-20T14:33:14+00:00</published>
<link rel='alternate' type='text/html' href='http://cgit.freebsd.org/ports/commit/?id=5564b3b420db29745d2d4981d1963200ddf53e35'/>
<id>5564b3b420db29745d2d4981d1963200ddf53e35</id>
<content type='text'>
The SO-version increased in the update to 1.12.2 in
a43418b81530f7e897abfbe18dd59f44265a1a0f .

Reported by:	VVD &lt;vvd@unislabs.com&gt;
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
The SO-version increased in the update to 1.12.2 in
a43418b81530f7e897abfbe18dd59f44265a1a0f .

Reported by:	VVD &lt;vvd@unislabs.com&gt;
</pre>
</div>
</content>
</entry>
<entry>
<title>science: remove 'Created by' lines</title>
<updated>2022-07-20T14:22:51+00:00</updated>
<author>
<name>Tobias C. Berner</name>
<email>tcberner@FreeBSD.org</email>
</author>
<published>2022-07-20T14:22:51+00:00</published>
<link rel='alternate' type='text/html' href='http://cgit.freebsd.org/ports/commit/?id=46196047a4df0f85aaee442799209fdaacf03361'/>
<id>46196047a4df0f85aaee442799209fdaacf03361</id>
<content type='text'>
A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner &lt;fehlner@gmx.de&gt;
  *  Brad Huntting &lt;huntting@glarp.com&gt;
  *  Chao Shin &lt;quakelee@cn.FreeBSD.org&gt;
  *  Cheng-Lung Sung &lt;clsung@FreeBSD.org&gt;
  *  Chia-Hsing Yu &lt;me@davidyu.org&gt;
  *  Chris Rees &lt;utisoft@gmail.com&gt;
  *  David Naylor &lt;dbn@FreeBSD.org&gt;
  *  Dmitry Sivachenko &lt;demon@FreeBSD.org&gt;
  *  Ed Schouten &lt;ed@FreeBSD.org&gt;
  *  Eric Freeman &lt;freebsdports@chillibear.com&gt;
  *  Erik B Knudsen
  *  Fernan Aguero &lt;fernan@iib.unsam.edu.ar&gt;
  *  Frederic Culot &lt;frederic@culot.org&gt;
  *  Gea-Suan Lin &lt;gslin@gslin.org&gt;
  *  Glenn Johnson
  *  Greg Lewis &lt;glewis@FreeBSD.org&gt;
  *  Igor Serikov &lt;iserikov@acm.org&gt;
  *  Johannes Dieterich &lt;dieterich@ogolem.org&gt;
  *  Johannes Dieterich &lt;jmd@FreeBSD.org&gt;
  *  Johannes M Dieterich &lt;jmd@FreeBSD.org&gt;
  *  Johannes Meixner &lt;johannes@perceivon.net&gt;
  *  Ju Pengfei &lt;jupengfei@gmail.com&gt;
  *  Kay Lehmann &lt;kay_lehmann@web.de&gt;
  *  Klaus Aehlig &lt;aehlig@linta.de&gt;
  *  Kurt Kanzenbach &lt;kurt@kmk-computers.de&gt;
  *  Leland Wang &lt;llwang@infor.org&gt;
  *  Li-Lun Wang &lt;llwang@infor.org&gt;
  *  Markus Brueffer &lt;markus@FreeBSD.org&gt;
  *  NAKATA Maho &lt;maho@FreeBSD.org&gt;
  *  NAKATA, Maho &lt;maho@FreeBSD.org&gt;
  *  Nakata Maho &lt;chat95@mbox.kyoto-inet.or.jp&gt;
  *  Nakata Maho &lt;maho@FreeBSD.org&gt;
  *  Pav Lucistnik &lt;pav@FreeBSD.org&gt;
  *  Pav Lucistnik &lt;pav@oook.cz&gt;
  *  Pedro F. Giffuni
  *  Pedro F. Giffuni &lt;giffunip@tutopia.com&gt;
  *  Pedro Giffuni
  *  Pedro Giffuni &lt;giffunip@asme.org&gt;
  *  Po-Chuan Hsieh &lt;sunpoet@FreeBSD.org&gt;
  *  Rong-En Fan &lt;rafan@FreeBSD.org&gt;
  *  Ryo MIYAMOTO &lt;rmiya@cc.hirosaki-u.ac.jp&gt;
  *  Seamus Venasse &lt;svenasse@polaris.ca&gt;
  *  Shin'ya Murakami &lt;murakami@ahs.scitec.kobe-u.ac.jp&gt;
  *  Shin-ya MURAKAMI &lt;murashin@gfd-dennou.org&gt;
  *  Shin-ya Murakami &lt;murashin@gfd-dennou.org&gt;
  *  Stas Timokhin &lt;devel@stasyan.com&gt;
  *  Stephen Montgomery-Smith &lt;stephen@math.missouri.edu&gt;
  *  Steve Wills &lt;steve@mouf.net
  *  Steve Wills &lt;steve@mouf.net&gt;
  *  Sunpoet Po-Chuan Hsieh &lt;sunpoet@FreeBSD.org&gt;
  *  Sunpoet Po-Chuan Hsieh &lt;sunpoet@sunpoet.net&gt;
  *  TAKATSU Tomonari &lt;tota@FreeBSD.org&gt;
  *  TAOKA Fumiyoshi
  *  Thierry Thomas &lt;thierry@pompo.net&gt;
  *  Tim Cas &lt;ports@stdrand.com&gt;
  *  Uffe Jakobsen &lt;uffe@uffe.org&gt;
  *  Veniamin Gvozdikov &lt;vg@FreeBSD.org&gt;
  *  Vsevolod Stakhov &lt;vsevolod@highsecure.ru&gt;
  *  Wen Heping &lt;wen@FreeBSD.org&gt;
  *  Wen Heping &lt;wenheping@gmail.com&gt;
  *  Wen heping &lt;wenheping@gmail.com&gt;
  *  Ying-Chieh Liao &lt;ijliao@FreeBSD.org&gt;
  *  Yuri Victorovich &lt;yuri@rawbw.com&gt;
  *  anholt@FreeBSD.org
  *  bacon@smithers.neuro.mcw.edu
  *  batman &lt;batman@udel.edu&gt;
  *  db
  *  gurkan@phys.ethz.ch
  *  ijliao
  *  jbacon
  *  maintainer.freebsd@xpoundit.com
  *  mi
  *  rafan@infor.org
  *  shurd@FreeBSD.org
  *  thierry@pompo.net
  *  will

With hat:	portmgr
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner &lt;fehlner@gmx.de&gt;
  *  Brad Huntting &lt;huntting@glarp.com&gt;
  *  Chao Shin &lt;quakelee@cn.FreeBSD.org&gt;
  *  Cheng-Lung Sung &lt;clsung@FreeBSD.org&gt;
  *  Chia-Hsing Yu &lt;me@davidyu.org&gt;
  *  Chris Rees &lt;utisoft@gmail.com&gt;
  *  David Naylor &lt;dbn@FreeBSD.org&gt;
  *  Dmitry Sivachenko &lt;demon@FreeBSD.org&gt;
  *  Ed Schouten &lt;ed@FreeBSD.org&gt;
  *  Eric Freeman &lt;freebsdports@chillibear.com&gt;
  *  Erik B Knudsen
  *  Fernan Aguero &lt;fernan@iib.unsam.edu.ar&gt;
  *  Frederic Culot &lt;frederic@culot.org&gt;
  *  Gea-Suan Lin &lt;gslin@gslin.org&gt;
  *  Glenn Johnson
  *  Greg Lewis &lt;glewis@FreeBSD.org&gt;
  *  Igor Serikov &lt;iserikov@acm.org&gt;
  *  Johannes Dieterich &lt;dieterich@ogolem.org&gt;
  *  Johannes Dieterich &lt;jmd@FreeBSD.org&gt;
  *  Johannes M Dieterich &lt;jmd@FreeBSD.org&gt;
  *  Johannes Meixner &lt;johannes@perceivon.net&gt;
  *  Ju Pengfei &lt;jupengfei@gmail.com&gt;
  *  Kay Lehmann &lt;kay_lehmann@web.de&gt;
  *  Klaus Aehlig &lt;aehlig@linta.de&gt;
  *  Kurt Kanzenbach &lt;kurt@kmk-computers.de&gt;
  *  Leland Wang &lt;llwang@infor.org&gt;
  *  Li-Lun Wang &lt;llwang@infor.org&gt;
  *  Markus Brueffer &lt;markus@FreeBSD.org&gt;
  *  NAKATA Maho &lt;maho@FreeBSD.org&gt;
  *  NAKATA, Maho &lt;maho@FreeBSD.org&gt;
  *  Nakata Maho &lt;chat95@mbox.kyoto-inet.or.jp&gt;
  *  Nakata Maho &lt;maho@FreeBSD.org&gt;
  *  Pav Lucistnik &lt;pav@FreeBSD.org&gt;
  *  Pav Lucistnik &lt;pav@oook.cz&gt;
  *  Pedro F. Giffuni
  *  Pedro F. Giffuni &lt;giffunip@tutopia.com&gt;
  *  Pedro Giffuni
  *  Pedro Giffuni &lt;giffunip@asme.org&gt;
  *  Po-Chuan Hsieh &lt;sunpoet@FreeBSD.org&gt;
  *  Rong-En Fan &lt;rafan@FreeBSD.org&gt;
  *  Ryo MIYAMOTO &lt;rmiya@cc.hirosaki-u.ac.jp&gt;
  *  Seamus Venasse &lt;svenasse@polaris.ca&gt;
  *  Shin'ya Murakami &lt;murakami@ahs.scitec.kobe-u.ac.jp&gt;
  *  Shin-ya MURAKAMI &lt;murashin@gfd-dennou.org&gt;
  *  Shin-ya Murakami &lt;murashin@gfd-dennou.org&gt;
  *  Stas Timokhin &lt;devel@stasyan.com&gt;
  *  Stephen Montgomery-Smith &lt;stephen@math.missouri.edu&gt;
  *  Steve Wills &lt;steve@mouf.net
  *  Steve Wills &lt;steve@mouf.net&gt;
  *  Sunpoet Po-Chuan Hsieh &lt;sunpoet@FreeBSD.org&gt;
  *  Sunpoet Po-Chuan Hsieh &lt;sunpoet@sunpoet.net&gt;
  *  TAKATSU Tomonari &lt;tota@FreeBSD.org&gt;
  *  TAOKA Fumiyoshi
  *  Thierry Thomas &lt;thierry@pompo.net&gt;
  *  Tim Cas &lt;ports@stdrand.com&gt;
  *  Uffe Jakobsen &lt;uffe@uffe.org&gt;
  *  Veniamin Gvozdikov &lt;vg@FreeBSD.org&gt;
  *  Vsevolod Stakhov &lt;vsevolod@highsecure.ru&gt;
  *  Wen Heping &lt;wen@FreeBSD.org&gt;
  *  Wen Heping &lt;wenheping@gmail.com&gt;
  *  Wen heping &lt;wenheping@gmail.com&gt;
  *  Ying-Chieh Liao &lt;ijliao@FreeBSD.org&gt;
  *  Yuri Victorovich &lt;yuri@rawbw.com&gt;
  *  anholt@FreeBSD.org
  *  bacon@smithers.neuro.mcw.edu
  *  batman &lt;batman@udel.edu&gt;
  *  db
  *  gurkan@phys.ethz.ch
  *  ijliao
  *  jbacon
  *  maintainer.freebsd@xpoundit.com
  *  mi
  *  rafan@infor.org
  *  shurd@FreeBSD.org
  *  thierry@pompo.net
  *  will

With hat:	portmgr
</pre>
</div>
</content>
</entry>
<entry>
<title>science/silo: Change LIB_DEPENDS from hdf5 to hdf5-110</title>
<updated>2022-07-18T12:51:29+00:00</updated>
<author>
<name>Po-Chuan Hsieh</name>
<email>sunpoet@FreeBSD.org</email>
</author>
<published>2022-07-18T12:50:25+00:00</published>
<link rel='alternate' type='text/html' href='http://cgit.freebsd.org/ports/commit/?id=dc7857d77b149f7c30d3760b8dc3cc5caa7a4da4'/>
<id>dc7857d77b149f7c30d3760b8dc3cc5caa7a4da4</id>
<content type='text'>
- Bump PORTREVISION for dependency change
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
- Bump PORTREVISION for dependency change
</pre>
</div>
</content>
</entry>
<entry>
<title>science/silo: Fix build with HDF5 1.10.8+</title>
<updated>2022-06-16T15:13:02+00:00</updated>
<author>
<name>Po-Chuan Hsieh</name>
<email>sunpoet@FreeBSD.org</email>
</author>
<published>2022-06-16T15:12:06+00:00</published>
<link rel='alternate' type='text/html' href='http://cgit.freebsd.org/ports/commit/?id=9f1657899a689c2d44f361bbdce3f5e67fa2c7d4'/>
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