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authorYuri Victorovich <yuri@FreeBSD.org>2024-10-30 15:48:41 +0000
committerYuri Victorovich <yuri@FreeBSD.org>2024-10-30 15:48:53 +0000
commit005a3832061179ff4ec7f8589ebd2e2e61ae31fa (patch)
tree97aba4deac9c0d422bf80845ed6ec04d6535c8c3
parent9c993823d815cb3bfc29e5f30f2855510144232c (diff)
downloadports-005a3832061179ff4ec7f8589ebd2e2e61ae31fa.tar.gz
ports-005a3832061179ff4ec7f8589ebd2e2e61ae31fa.zip
science/py-hoomd-blue: update 4.8.2 → 4.9.0
Reported by: portscout
-rw-r--r--science/py-hoomd-blue/Makefile5
-rw-r--r--science/py-hoomd-blue/distinfo6
-rw-r--r--science/py-hoomd-blue/pkg-plist25
3 files changed, 31 insertions, 5 deletions
diff --git a/science/py-hoomd-blue/Makefile b/science/py-hoomd-blue/Makefile
index d9bf9b4ec882..987154f94ad6 100644
--- a/science/py-hoomd-blue/Makefile
+++ b/science/py-hoomd-blue/Makefile
@@ -1,12 +1,13 @@
PORTNAME= hoomd-blue
DISTVERSIONPREFIX= v
-DISTVERSION= 4.8.2
+DISTVERSION= 4.9.0
CATEGORIES= science # physics
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
COMMENT= Molecular dynamics and Monte Carlo soft matter simulation
-WWW= https://glotzerlab.engin.umich.edu/hoomd-blue/
+WWW= https://glotzerlab.engin.umich.edu/hoomd-blue/ \
+ https://github.com/glotzerlab/hoomd-blue
LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
diff --git a/science/py-hoomd-blue/distinfo b/science/py-hoomd-blue/distinfo
index 96d937c53171..2eac5be078b3 100644
--- a/science/py-hoomd-blue/distinfo
+++ b/science/py-hoomd-blue/distinfo
@@ -1,6 +1,6 @@
-TIMESTAMP = 1721889482
-SHA256 (glotzerlab-hoomd-blue-v4.8.2_GH0.tar.gz) = e4359d57d44c8560b88755a8808796bc6d4c2e1d1d4a06adc876c94ba2616929
-SIZE (glotzerlab-hoomd-blue-v4.8.2_GH0.tar.gz) = 2809858
+TIMESTAMP = 1730276977
+SHA256 (glotzerlab-hoomd-blue-v4.9.0_GH0.tar.gz) = 913322b9054a4ece0107697e5e6f3985f2f6f3e45ff45630e329cbd853744924
+SIZE (glotzerlab-hoomd-blue-v4.9.0_GH0.tar.gz) = 2940565
SHA256 (glotzerlab-upp11-0c1fb8d_GH0.tar.gz) = fe9db1b06fd504876e243c9031a594edbd0323e8337f908885f31cc980f642e9
SIZE (glotzerlab-upp11-0c1fb8d_GH0.tar.gz) = 21024
SHA256 (glotzerlab-nano-signal-slot-34223a4_GH0.tar.gz) = bfe51f7dd2cc097b70202f849c1a42a13ea5f53a1e902e053df155c3a157c30b
diff --git a/science/py-hoomd-blue/pkg-plist b/science/py-hoomd-blue/pkg-plist
index 04a8bf079eda..c1ea9dbfddf3 100644
--- a/science/py-hoomd-blue/pkg-plist
+++ b/science/py-hoomd-blue/pkg-plist
@@ -55,6 +55,8 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/angular_step.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/expanded_gaussian.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/lennard_jones.py
+%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/lj_gauss.py
+%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/opp.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/pair.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/step.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/union.py
@@ -74,6 +76,8 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_angular_step.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_expanded_gaussian.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_lennard_jones.py
+%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_lj_gauss.py
+%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_opp.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_step.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_union.py
%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_union_user.py
@@ -507,7 +511,9 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/PairPotential.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/PairPotentialAngularStep.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/PairPotentialExpandedGaussian.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/PairPotentialLJGauss.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/PairPotentialLennardJones.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/PairPotentialOPP.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/PairPotentialStep.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/PairPotentialUnion.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ShapeConvexPolygon.h
@@ -548,6 +554,11 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/AnisoPotentialPair.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/AnisoPotentialPairGPU.cuh
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/AnisoPotentialPairGPU.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/AreaConservationMeshForceCompute.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/AreaConservationMeshForceComputeGPU.cuh
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/AreaConservationMeshForceComputeGPU.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/BendingRigidityMeshForceCompute.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/BendingRigidityMeshForceComputeGPU.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/BondTablePotential.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/BondTablePotentialGPU.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/CommunicatorGrid.h
@@ -613,6 +624,8 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/HarmonicDihedralForceComputeGPU.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/HarmonicImproperForceCompute.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/HarmonicImproperForceComputeGPU.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/HelfrichMeshForceCompute.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/HelfrichMeshForceComputeGPU.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/IntegrationMethodTwoStep.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/IntegratorTwoStep.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/ManifoldDiamond.h
@@ -639,6 +652,8 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/OPLSDihedralForceComputeGPU.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/PPPMForceCompute.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/PPPMForceComputeGPU.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/PairModulator.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/PatchEnvelope.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/PeriodicImproper.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/PeriodicImproperForceCompute.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/PeriodicImproperForceComputeGPU.h
@@ -664,6 +679,9 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TableAngleForceComputeGPU.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TableDihedralForceCompute.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TableDihedralForceComputeGPU.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TriangleAreaConservationMeshForceCompute.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TriangleAreaConservationMeshForceComputeGPU.cuh
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TriangleAreaConservationMeshForceComputeGPU.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepBD.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepBDGPU.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepConstantPressure.h
@@ -682,6 +700,8 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepRATTLENVE.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepRATTLENVEGPU.cuh
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepRATTLENVEGPU.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/VolumeConservationMeshForceCompute.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/VolumeConservationMeshForceComputeGPU.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/WallData.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/ZeroMomentumUpdater.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/metal/EAMForceCompute.h
@@ -699,6 +719,8 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/Communicator.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/CommunicatorUtilities.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/ConstantForce.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/CosineChannelGeometry.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/CosineExpansionContractionGeometry.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/Integrator.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/ManualVirtualParticleFiller.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/NoForce.h
@@ -744,7 +766,9 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/md/manifold.py
%%PYTHON_SITELIBDIR%%/hoomd/md/many_body.py
%%PYTHON_SITELIBDIR%%/hoomd/md/mesh/__init__.py
+%%PYTHON_SITELIBDIR%%/hoomd/md/mesh/bending.py
%%PYTHON_SITELIBDIR%%/hoomd/md/mesh/bond.py
+%%PYTHON_SITELIBDIR%%/hoomd/md/mesh/conservation.py
%%PYTHON_SITELIBDIR%%/hoomd/md/mesh/potential.py
%%PYTHON_SITELIBDIR%%/hoomd/md/methods/__init__.py
%%PYTHON_SITELIBDIR%%/hoomd/md/methods/methods.py
@@ -788,6 +812,7 @@ lib/cmake/hoomd/hoomd-targets.cmake
%%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_minimize_fire.py
%%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_nlist.py
%%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_nlist_tuner.py
+%%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_patch.py
%%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_potential.py
%%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_pppm_coulomb.py
%%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_reverse_perturbation_flow.py