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| author | Yuri Victorovich <yuri@FreeBSD.org> | 2025-02-06 08:46:13 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2025-02-06 15:05:37 +0000 |
| commit | 041e3a8bc5470fd083f8d20801fe2877e2854cf5 (patch) | |
| tree | 4668031fd76b2ce42e110fd2769149dbbac95575 | |
| parent | 11db35ac67dfe7252477e465b621d2ee6e7996d9 (diff) | |
biology/gatk: Fix build breakage after gradle update to 8.12.1
Reported by: fallout
| -rw-r--r-- | biology/gatk/Makefile | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/biology/gatk/Makefile b/biology/gatk/Makefile index 2bcf2b0647e3..7a69c6327be0 100644 --- a/biology/gatk/Makefile +++ b/biology/gatk/Makefile @@ -11,7 +11,7 @@ WWW= https://gatk.broadinstitute.org/hc/en-us LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.TXT -BUILD_DEPENDS= gradle:devel/gradle +BUILD_DEPENDS= gradle8:devel/gradle8 RUN_DEPENDS= ${LOCALBASE}/lib/libfml.so:biology/fermi-lite \ gkl>0:biology/gkl \ mummer>0:biology/mummer @@ -106,7 +106,7 @@ post-extract: # need a separate extract step because the cache is in /tmp, and n .endif do-build: - @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} gradle \ + @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} gradle8 \ --gradle-user-home ${DEPS_CACHE_DIR}/gradle-${PORTNAME} --project-cache-dir ${DEPS_CACHE_DIR}/gradle-${PORTNAME} \ ${GRADLE_ARGS} --build-cache localJar @@ -116,7 +116,7 @@ do-install: do-test: # tests require WITH_LARGE_FILES=ON, and they use a lot of disk space @cd ${WRKSRC} && \ - ${SETENV} ${TEST_ENV} gradle -DLIBBWA_PATH=${PREFIX}/lib/libfml.so test + ${SETENV} ${TEST_ENV} gradle8 -DLIBBWA_PATH=${PREFIX}/lib/libfml.so test # tests results as of version 4.6.1.0: 288552 tests, 301 failures, 37 ignored, 1h55m5.63s duration, 99% successful, see https://github.com/broadinstitute/gatk/issues/8940 # see https://github.com/broadinstitute/gatk/issues/8939: Tests fail to find libgkl libraries in /usr/local/lib |