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| author | Yuri Victorovich <yuri@FreeBSD.org> | 2023-08-03 05:09:53 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2023-08-03 07:02:05 +0000 |
| commit | 0f9f8aa4c37e2040645a26a544ca3fcc6b50d83d (patch) | |
| tree | 7209a1bcadec5478ba7057a2b69bfb1b298cb606 | |
| parent | 4073adf95980ed90d334ca2db4bb4628f1f83da2 (diff) | |
| download | ports-0f9f8aa4c37e2040645a26a544ca3fcc6b50d83d.tar.gz ports-0f9f8aa4c37e2040645a26a544ca3fcc6b50d83d.zip | |
biology/py-scikit-bio: Update 0.5.8 → 0.5.9
Reported by: portscout
| -rw-r--r-- | biology/py-scikit-bio/Makefile | 18 | ||||
| -rw-r--r-- | biology/py-scikit-bio/distinfo | 6 | ||||
| -rw-r--r-- | biology/py-scikit-bio/files/patch-pyproject.toml | 10 |
3 files changed, 22 insertions, 12 deletions
diff --git a/biology/py-scikit-bio/Makefile b/biology/py-scikit-bio/Makefile index 99d32835ce6c..84fad483a3f0 100644 --- a/biology/py-scikit-bio/Makefile +++ b/biology/py-scikit-bio/Makefile @@ -1,6 +1,5 @@ PORTNAME= scikit-bio -DISTVERSION= 0.5.8 -PORTREVISION= 1 +DISTVERSION= 0.5.9 CATEGORIES= biology education python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -14,22 +13,23 @@ LICENSE_FILE= ${WRKSRC}/LICENSE.txt BROKEN_aarch64= fails to build: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size, see https://github.com/biocore/scikit-bio/issues/1816 -BUILD_DEPENDS= ${PYNUMPY} +BUILD_DEPENDS= ${PYNUMPY} \ + ${PY_SETUPTOOLS} \ + ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYNUMPY} \ - ${PYTHON_PKGNAMEPREFIX}cachecontrol>=0.11.5:www/py-cachecontrol@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}decorator>=3.4.2:devel/py-decorator@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}h5py>=2.9.0:science/py-h5py@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}h5py>=3.6.0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hdmedians>=0.14.1:math/py-hdmedians@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ipython>=3.2.0:devel/ipython@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}lockfile>=0.10.2:devel/py-lockfile@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.4.3:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}natsort>=4.0.3:devel/py-natsort@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pandas>=1.0.0:math/py-pandas@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pandas>=1.5.0:math/py-pandas@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}requests>=2.20.0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.19.1:science/py-scikit-learn@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}scipy>=1.3.0:science/py-scipy@${PY_FLAVOR} + ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} USES= python -USE_PYTHON= distutils cython autoplist pytest # tests fail to run, see https://github.com/biocore/scikit-bio/issues/1846 +USE_PYTHON= pep517 cython autoplist pytest # tests fail to run, see https://github.com/biocore/scikit-bio/issues/1846 TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} diff --git a/biology/py-scikit-bio/distinfo b/biology/py-scikit-bio/distinfo index 2f69722f7ffc..d65c97d3f9c3 100644 --- a/biology/py-scikit-bio/distinfo +++ b/biology/py-scikit-bio/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1679325956 -SHA256 (scikit-bio-0.5.8.tar.gz) = d55a83c3e5f2ca1132744e1409233fb61d9af0c5a95deb7b291e6e340712b86b -SIZE (scikit-bio-0.5.8.tar.gz) = 3534584 +TIMESTAMP = 1691038332 +SHA256 (scikit-bio-0.5.9.tar.gz) = 7ae044dc8bee231900248adc3a8659077e76140d56ac9f42bd01fb7981014910 +SIZE (scikit-bio-0.5.9.tar.gz) = 3542513 diff --git a/biology/py-scikit-bio/files/patch-pyproject.toml b/biology/py-scikit-bio/files/patch-pyproject.toml new file mode 100644 index 000000000000..67286b671d40 --- /dev/null +++ b/biology/py-scikit-bio/files/patch-pyproject.toml @@ -0,0 +1,10 @@ +--- pyproject.toml.orig 2023-08-03 04:59:44 UTC ++++ pyproject.toml +@@ -1,6 +1,6 @@ + [build-system] + # https://numpy.org/doc/stable/dev/depending_on_numpy.html#adding-a-dependency-on-numpy +-requires = ["Cython>=0.29.32", "oldest-supported-numpy", "setuptools", "wheel"] ++requires = ["Cython>=0.29.32", "numpy", "setuptools", "wheel"] + + [tool.pytest.ini_options] + filterwarnings = [ |