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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2026-07-11 19:32:16 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2026-07-11 19:32:16 +0000 |
| commit | 1ef610474aab23df99c32f6905a8f0b4dc304514 (patch) | |
| tree | 0d528487235aefc7e26dc43de9ec2ea692231b93 | |
| parent | c688db2d765887aecf3f4a6b9fe731f543ae4616 (diff) | |
biology/samtools: Update to 1.24
Numerous fixes and enhancements
Changes: https://github.com/samtools/samtools/releases
Reported by: portscout
| -rw-r--r-- | biology/samtools/Makefile | 8 | ||||
| -rw-r--r-- | biology/samtools/distinfo | 6 | ||||
| -rw-r--r-- | biology/samtools/pkg-plist | 1 |
3 files changed, 7 insertions, 8 deletions
diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile index 53389082d07d..8027aaae626b 100644 --- a/biology/samtools/Makefile +++ b/biology/samtools/Makefile @@ -1,5 +1,5 @@ PORTNAME= samtools -DISTVERSION= 1.23.1 +DISTVERSION= 1.24 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -9,7 +9,7 @@ WWW= https://www.htslib.org/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= htslib>=1.22:biology/htslib +BUILD_DEPENDS= htslib>=1.24:biology/htslib LIB_DEPENDS= libhts.so:biology/htslib TEST_DEPENDS= bash:shells/bash @@ -20,12 +20,10 @@ USE_GITHUB= yes USE_PERL5= test GNU_CONFIGURE= yes GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share -SHEBANG_FILES= misc/*.pl misc/plot-bamstats test/test.pl +SHEBANG_FILES= misc/*.pl misc/*.py misc/plot-bamstats test/test.pl CONFIGURE_ARGS= --with-htslib=system TEST_TARGET= test -CPE_VENDOR= htslib - .include <bsd.port.mk> diff --git a/biology/samtools/distinfo b/biology/samtools/distinfo index 2b86f5f2668a..e58121ee473b 100644 --- a/biology/samtools/distinfo +++ b/biology/samtools/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1774784873 -SHA256 (samtools-samtools-1.23.1_GH0.tar.gz) = 61314c16f6b502998f79c8d5d3d92f0ab1aab1ca23d60b8abae74e53a4119c87 -SIZE (samtools-samtools-1.23.1_GH0.tar.gz) = 5758667 +TIMESTAMP = 1783682156 +SHA256 (samtools-samtools-1.24_GH0.tar.gz) = 46be6a9c9dc593981d699fb8efa46977faf45160b34c0b29749b35e394c6b61d +SIZE (samtools-samtools-1.24_GH0.tar.gz) = 5776140 diff --git a/biology/samtools/pkg-plist b/biology/samtools/pkg-plist index f841e6b58a07..a76fe9c0c10d 100644 --- a/biology/samtools/pkg-plist +++ b/biology/samtools/pkg-plist @@ -16,6 +16,7 @@ bin/sam2vcf.pl bin/samtools bin/samtools.pl bin/seq_cache_populate.pl +bin/seq_cache_populate.py bin/soap2sam.pl bin/wgsim bin/wgsim_eval.pl |