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author | Jason W. Bacon <jwb@FreeBSD.org> | 2022-01-08 00:04:02 +0000 |
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committer | Jason W. Bacon <jwb@FreeBSD.org> | 2022-01-08 00:04:02 +0000 |
commit | 231919fc1935355a5f7dc5466844c04cb51c6444 (patch) | |
tree | 013630ba8fefd62c00c7f6b73a2dc69c0267e49e | |
parent | 9596b1060cd4f5ee68cdf00943aaa9f00ed96559 (diff) | |
download | ports-231919fc1935355a5f7dc5466844c04cb51c6444.tar.gz ports-231919fc1935355a5f7dc5466844c04cb51c6444.zip |
biology/vsearch: Update to 2.19.0
A few bug fixes, new subcommands and options
Changes: https://github.com/torognes/vsearch/tags
Reporte by: portscout
-rw-r--r-- | biology/vsearch/Makefile | 8 | ||||
-rw-r--r-- | biology/vsearch/distinfo | 6 | ||||
-rw-r--r-- | biology/vsearch/files/patch-configure.ac | 13 | ||||
-rw-r--r-- | biology/vsearch/files/patch-src_Makefile.am | 18 |
4 files changed, 7 insertions, 38 deletions
diff --git a/biology/vsearch/Makefile b/biology/vsearch/Makefile index 7ebf356c1c06..7a264f379a41 100644 --- a/biology/vsearch/Makefile +++ b/biology/vsearch/Makefile @@ -1,7 +1,7 @@ -PORTNAME= vsearch +PORTNAME= vsearch DISTVERSIONPREFIX= v -DISTVERSION= 2.17.1 -CATEGORIES= biology +DISTVERSION= 2.19.0 +CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org COMMENT= Versatile open-source tool for metagenomics @@ -10,7 +10,7 @@ LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE.txt ONLY_FOR_ARCHS= aarch64 amd64 powerpc64le -ONLY_FOR_ARCHS_REASON= explicitly enumerated by upstream developers +ONLY_FOR_ARCHS_REASON= Explicitly enumerated by upstream developers LIB_DEPENDS= libsysinfo.so:devel/libsysinfo diff --git a/biology/vsearch/distinfo b/biology/vsearch/distinfo index 6fe700db2278..ff23577ebb73 100644 --- a/biology/vsearch/distinfo +++ b/biology/vsearch/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1623856296 -SHA256 (torognes-vsearch-v2.17.1_GH0.tar.gz) = cee02a1fceb919db8916c6f114926a11166db15d2da79c1c1f680285435d39bc -SIZE (torognes-vsearch-v2.17.1_GH0.tar.gz) = 249268 +TIMESTAMP = 1641573705 +SHA256 (torognes-vsearch-v2.19.0_GH0.tar.gz) = 74bc30786512d07e49836320af1e745ef527c4472317621d3bd0b50cbc218736 +SIZE (torognes-vsearch-v2.19.0_GH0.tar.gz) = 253686 diff --git a/biology/vsearch/files/patch-configure.ac b/biology/vsearch/files/patch-configure.ac deleted file mode 100644 index 150d3745c8a2..000000000000 --- a/biology/vsearch/files/patch-configure.ac +++ /dev/null @@ -1,13 +0,0 @@ ---- configure.ac.orig 2021-01-30 15:11:25 UTC -+++ configure.ac -@@ -14,8 +14,8 @@ MACOSX_DEPLOYMENT_TARGET="10.9" - - # Set default gcc and g++ options - --CFLAGS='-g' --CXXFLAGS='-g -std=c++11' -+# CFLAGS='-g' -+# CXXFLAGS='-g -std=c++11' - - # Checks for programs. - AC_PROG_CXX diff --git a/biology/vsearch/files/patch-src_Makefile.am b/biology/vsearch/files/patch-src_Makefile.am deleted file mode 100644 index e54c9a606035..000000000000 --- a/biology/vsearch/files/patch-src_Makefile.am +++ /dev/null @@ -1,18 +0,0 @@ ---- src/Makefile.am.orig 2019-04-30 11:57:32 UTC -+++ src/Makefile.am -@@ -1,12 +1,12 @@ - bin_PROGRAMS = $(top_builddir)/bin/vsearch - - if TARGET_PPC --AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g -mcpu=power8 -+AM_CXXFLAGS=-Wall -Wsign-compare - else - if TARGET_AARCH64 --AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -+AM_CXXFLAGS=-Wall -Wsign-compare - else --AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -+AM_CXXFLAGS=-Wall -Wsign-compare - endif - endif - |