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authorJason W. Bacon <jwb@FreeBSD.org>2022-01-08 00:04:02 +0000
committerJason W. Bacon <jwb@FreeBSD.org>2022-01-08 00:04:02 +0000
commit231919fc1935355a5f7dc5466844c04cb51c6444 (patch)
tree013630ba8fefd62c00c7f6b73a2dc69c0267e49e
parent9596b1060cd4f5ee68cdf00943aaa9f00ed96559 (diff)
downloadports-231919fc1935355a5f7dc5466844c04cb51c6444.tar.gz
ports-231919fc1935355a5f7dc5466844c04cb51c6444.zip
biology/vsearch: Update to 2.19.0
A few bug fixes, new subcommands and options Changes: https://github.com/torognes/vsearch/tags Reporte by: portscout
-rw-r--r--biology/vsearch/Makefile8
-rw-r--r--biology/vsearch/distinfo6
-rw-r--r--biology/vsearch/files/patch-configure.ac13
-rw-r--r--biology/vsearch/files/patch-src_Makefile.am18
4 files changed, 7 insertions, 38 deletions
diff --git a/biology/vsearch/Makefile b/biology/vsearch/Makefile
index 7ebf356c1c06..7a264f379a41 100644
--- a/biology/vsearch/Makefile
+++ b/biology/vsearch/Makefile
@@ -1,7 +1,7 @@
-PORTNAME= vsearch
+PORTNAME= vsearch
DISTVERSIONPREFIX= v
-DISTVERSION= 2.17.1
-CATEGORIES= biology
+DISTVERSION= 2.19.0
+CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
COMMENT= Versatile open-source tool for metagenomics
@@ -10,7 +10,7 @@ LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/LICENSE.txt
ONLY_FOR_ARCHS= aarch64 amd64 powerpc64le
-ONLY_FOR_ARCHS_REASON= explicitly enumerated by upstream developers
+ONLY_FOR_ARCHS_REASON= Explicitly enumerated by upstream developers
LIB_DEPENDS= libsysinfo.so:devel/libsysinfo
diff --git a/biology/vsearch/distinfo b/biology/vsearch/distinfo
index 6fe700db2278..ff23577ebb73 100644
--- a/biology/vsearch/distinfo
+++ b/biology/vsearch/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1623856296
-SHA256 (torognes-vsearch-v2.17.1_GH0.tar.gz) = cee02a1fceb919db8916c6f114926a11166db15d2da79c1c1f680285435d39bc
-SIZE (torognes-vsearch-v2.17.1_GH0.tar.gz) = 249268
+TIMESTAMP = 1641573705
+SHA256 (torognes-vsearch-v2.19.0_GH0.tar.gz) = 74bc30786512d07e49836320af1e745ef527c4472317621d3bd0b50cbc218736
+SIZE (torognes-vsearch-v2.19.0_GH0.tar.gz) = 253686
diff --git a/biology/vsearch/files/patch-configure.ac b/biology/vsearch/files/patch-configure.ac
deleted file mode 100644
index 150d3745c8a2..000000000000
--- a/biology/vsearch/files/patch-configure.ac
+++ /dev/null
@@ -1,13 +0,0 @@
---- configure.ac.orig 2021-01-30 15:11:25 UTC
-+++ configure.ac
-@@ -14,8 +14,8 @@ MACOSX_DEPLOYMENT_TARGET="10.9"
-
- # Set default gcc and g++ options
-
--CFLAGS='-g'
--CXXFLAGS='-g -std=c++11'
-+# CFLAGS='-g'
-+# CXXFLAGS='-g -std=c++11'
-
- # Checks for programs.
- AC_PROG_CXX
diff --git a/biology/vsearch/files/patch-src_Makefile.am b/biology/vsearch/files/patch-src_Makefile.am
deleted file mode 100644
index e54c9a606035..000000000000
--- a/biology/vsearch/files/patch-src_Makefile.am
+++ /dev/null
@@ -1,18 +0,0 @@
---- src/Makefile.am.orig 2019-04-30 11:57:32 UTC
-+++ src/Makefile.am
-@@ -1,12 +1,12 @@
- bin_PROGRAMS = $(top_builddir)/bin/vsearch
-
- if TARGET_PPC
--AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g -mcpu=power8
-+AM_CXXFLAGS=-Wall -Wsign-compare
- else
- if TARGET_AARCH64
--AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic
-+AM_CXXFLAGS=-Wall -Wsign-compare
- else
--AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic
-+AM_CXXFLAGS=-Wall -Wsign-compare
- endif
- endif
-