diff options
| author | Jason W. Bacon <jwb@FreeBSD.org> | 2021-12-14 19:42:10 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2021-12-14 19:45:32 +0000 |
| commit | 3a7f92ec883e0d6926de8afe2e1c2ee8a005c13f (patch) | |
| tree | 25b3207a42b1ce9f231f9888396b590f2a5012e1 | |
| parent | d167ed211d061a3755621789fed9ba3a978d7553 (diff) | |
biology/biolibc-tools: Update to 0.1.1
Make all programs subcommands of "blt"
Several new commands
Updates for evolving libxtend and biolibc APIs
Add --version flag
Numerous minor fixes and enhancements
Changes: https://github.com/auerlab/biolibc-tools/releases/tag/0.1.1
| -rw-r--r-- | biology/biolibc-tools/Makefile | 5 | ||||
| -rw-r--r-- | biology/biolibc-tools/distinfo | 6 | ||||
| -rw-r--r-- | biology/biolibc-tools/pkg-plist | 26 |
3 files changed, 25 insertions, 12 deletions
diff --git a/biology/biolibc-tools/Makefile b/biology/biolibc-tools/Makefile index 39913d8b5347..4a63e3749e93 100644 --- a/biology/biolibc-tools/Makefile +++ b/biology/biolibc-tools/Makefile @@ -1,8 +1,7 @@ # Created by: J. Bacon <jwb@FreeBSD.org> PORTNAME= biolibc-tools -DISTVERSION= 0.1.0-34 -DISTVERSIONSUFFIX= -gf1224de +DISTVERSION= 0.1.1 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -13,13 +12,13 @@ LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= uthash>0:devel/uthash LIB_DEPENDS= libbiolibc.so:biology/biolibc \ - libxtend.so:devel/libxtend \ libxxhash.so:devel/xxhash USE_GITHUB= yes GH_ACCOUNT= auerlab +MAKE_ENV= VERSION=${PORTVERSION} INSTALL_TARGET= install-strip pre-build: diff --git a/biology/biolibc-tools/distinfo b/biology/biolibc-tools/distinfo index 9a1bab65b7ce..d3732ec6c333 100644 --- a/biology/biolibc-tools/distinfo +++ b/biology/biolibc-tools/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1630328729 -SHA256 (auerlab-biolibc-tools-0.1.0-34-gf1224de_GH0.tar.gz) = c63309cad0e73a9336deebfc9ea9104320810d45631141ec1a8554f6cf5a6cf7 -SIZE (auerlab-biolibc-tools-0.1.0-34-gf1224de_GH0.tar.gz) = 11683 +TIMESTAMP = 1639495090 +SHA256 (auerlab-biolibc-tools-0.1.1_GH0.tar.gz) = 169ea4bbd70049d9e364e145db0ca4793da99202f12262e00485407cfbd2997b +SIZE (auerlab-biolibc-tools-0.1.1_GH0.tar.gz) = 21700 diff --git a/biology/biolibc-tools/pkg-plist b/biology/biolibc-tools/pkg-plist index 04756a2801be..f5fe188a60a8 100644 --- a/biology/biolibc-tools/pkg-plist +++ b/biology/biolibc-tools/pkg-plist @@ -1,7 +1,21 @@ -bin/fastq-derep.sh -bin/fastx-derep -bin/fastx2tsv +bin/blt +libexec/biolibc-tools/chrom-lens +libexec/biolibc-tools/extract-seq +libexec/biolibc-tools/fasta2seq +libexec/biolibc-tools/fastq-derep.sh +libexec/biolibc-tools/fastx-derep +libexec/biolibc-tools/fastx2tsv +libexec/biolibc-tools/find-orfs +libexec/biolibc-tools/gff2bed libexec/biolibc-tools/uniq-seqs.awk -man/man1/fastq-dedup.sh.1.gz -man/man1/fastx-derep.1.gz -man/man1/fastx2tsv.1.gz +libexec/biolibc-tools/vcf-search +man/man1/blt-chrom-lens.1.gz +man/man1/blt-extract-seq.1.gz +man/man1/blt-fasta2seq.1.gz +man/man1/blt-fastq-derep.sh.1.gz +man/man1/blt-fastx-derep.1.gz +man/man1/blt-fastx2tsv.1.gz +man/man1/blt-find-orfs.1.gz +man/man1/blt-gff2bed.1.gz +man/man1/blt-vcf-search.1.gz +man/man1/blt.1.gz |