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authorJason W. Bacon <jwb@FreeBSD.org>2021-06-11 14:53:49 +0000
committerJason W. Bacon <jwb@FreeBSD.org>2021-06-11 15:05:18 +0000
commit495634f580bdb5bf7020c53ef98d348ad682bb86 (patch)
tree97b582bdca077989a1d23fd7866c9f3331f66814
parentccb9b063cc524e73ef18d39e63e3d20f09f46c8a (diff)
downloadports-495634f580bdb5bf7020c53ef98d348ad682bb86.tar.gz
ports-495634f580bdb5bf7020c53ef98d348ad682bb86.zip
biology/biolibc: Update to 0.1.3
-rw-r--r--biology/biolibc/Makefile13
-rw-r--r--biology/biolibc/distinfo6
-rw-r--r--biology/biolibc/pkg-plist32
3 files changed, 42 insertions, 9 deletions
diff --git a/biology/biolibc/Makefile b/biology/biolibc/Makefile
index dfe7d0a7c32b..9c039b8f1c79 100644
--- a/biology/biolibc/Makefile
+++ b/biology/biolibc/Makefile
@@ -1,5 +1,7 @@
+# Created by: J. Bacon <jwb@FreeBSD.org>
+
PORTNAME= biolibc
-DISTVERSION= 0.1.1
+DISTVERSION= 0.1.3
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@@ -8,7 +10,16 @@ COMMENT= Low-level high-performance bioinformatics library
LICENSE= BSD2CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
+LIB_DEPENDS= libxtend.so:devel/libxtend
+
USE_GITHUB= yes
+USE_LDCONFIG= yes
+
GH_ACCOUNT= auerlab
+INSTALL_TARGET= install-strip
+
+pre-build:
+ (cd ${WRKSRC} && ${MAKE} LOCALBASE=${LOCALBASE} depend)
+
.include <bsd.port.mk>
diff --git a/biology/biolibc/distinfo b/biology/biolibc/distinfo
index 353580791bed..2efe35731481 100644
--- a/biology/biolibc/distinfo
+++ b/biology/biolibc/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1616330997
-SHA256 (auerlab-biolibc-0.1.1_GH0.tar.gz) = 0b4a5a63a17998423a583e05e6244369b0c7195c09d2c1c25f1bcde45d7d6388
-SIZE (auerlab-biolibc-0.1.1_GH0.tar.gz) = 11770
+TIMESTAMP = 1623416887
+SHA256 (auerlab-biolibc-0.1.3_GH0.tar.gz) = 746a85a0e5ce9523fb0811cdbb36b4a4c8033190a2deb7e6b7b2566c12769ab7
+SIZE (auerlab-biolibc-0.1.3_GH0.tar.gz) = 30046
diff --git a/biology/biolibc/pkg-plist b/biology/biolibc/pkg-plist
index ce0fa3da78f3..5e508df38c26 100644
--- a/biology/biolibc/pkg-plist
+++ b/biology/biolibc/pkg-plist
@@ -1,6 +1,28 @@
-include/biostring.h
-include/dsvio.h
-include/samio.h
-include/vcfio.h
+include/biolibc/bed.h
+include/biolibc/biolibc.h
+include/biolibc/dsv.h
+include/biolibc/gff.h
+include/biolibc/plist.h
+include/biolibc/sam-buff.h
+include/biolibc/sam.h
+include/biolibc/vcf.h
lib/libbiolibc.a
-man/man1/biolibc.1.gz
+lib/libbiolibc.so
+lib/libbiolibc.so.2
+lib/libbiolibc.so.2.0
+man/man3/bed_check_order.3.gz
+man/man3/bed_gff_cmp.3.gz
+man/man3/bed_read_feature.3.gz
+man/man3/bed_set_chromosome.3.gz
+man/man3/bed_set_end_pos.3.gz
+man/man3/bed_set_fields.3.gz
+man/man3/bed_set_name.3.gz
+man/man3/bed_set_rgb_str.3.gz
+man/man3/bed_set_score.3.gz
+man/man3/bed_set_start_pos.3.gz
+man/man3/bed_set_strand.3.gz
+man/man3/bed_set_thick_end_pos.3.gz
+man/man3/bed_set_thick_start_pos.3.gz
+man/man3/bed_skip_header.3.gz
+man/man3/bed_write_feature.3.gz
+man/man3/biolibc.3.gz