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| author | Yuri Victorovich <yuri@FreeBSD.org> | 2022-10-04 02:03:33 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2022-10-04 02:40:27 +0000 |
| commit | 610c83b9e4f5c92a92210c99985b9d38c5682f2b (patch) | |
| tree | ef7bef5a2707342cd256497c63152875b0896bd4 | |
| parent | 16f9822faced6d49d01907cd1b92492770c53767 (diff) | |
| download | ports-610c83b9e4f5c92a92210c99985b9d38c5682f2b.tar.gz ports-610c83b9e4f5c92a92210c99985b9d38c5682f2b.zip | |
science/cif-tools: New port: Suite of programs to manipulate and examine mmCIF files
| -rw-r--r-- | science/Makefile | 1 | ||||
| -rw-r--r-- | science/cif-tools/Makefile | 21 | ||||
| -rw-r--r-- | science/cif-tools/distinfo | 3 | ||||
| -rw-r--r-- | science/cif-tools/files/patch-src_mmCQL.cpp | 10 | ||||
| -rw-r--r-- | science/cif-tools/pkg-descr | 2 | ||||
| -rw-r--r-- | science/cif-tools/pkg-plist | 16 |
6 files changed, 53 insertions, 0 deletions
diff --git a/science/Makefile b/science/Makefile index e34cd23b5309..97d726fb641f 100644 --- a/science/Makefile +++ b/science/Makefile @@ -52,6 +52,7 @@ SUBDIR += chemtool-devel SUBDIR += chimes-calculator SUBDIR += chrono + SUBDIR += cif-tools SUBDIR += clhep SUBDIR += clipper SUBDIR += code_saturne diff --git a/science/cif-tools/Makefile b/science/cif-tools/Makefile new file mode 100644 index 000000000000..6f366952ddba --- /dev/null +++ b/science/cif-tools/Makefile @@ -0,0 +1,21 @@ +PORTNAME= cif-tools +DISTVERSIONPREFIX= v +DISTVERSION= 1.0.3 +CATEGORIES= science + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Suite of programs to manipulate and examine mmCIF files +WWW= https://github.com/PDB-REDO/cif-tools + +LICENSE= BSD2CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +LIB_DEPENDS= libboost_iostreams.so:devel/boost-libs \ + libcifpp.so:science/libcifpp + +USES= cmake compiler:c++17-lang + +USE_GITHUB= yes +GH_ACCOUNT= PDB-REDO + +.include <bsd.port.mk> diff --git a/science/cif-tools/distinfo b/science/cif-tools/distinfo new file mode 100644 index 000000000000..875de464c6d7 --- /dev/null +++ b/science/cif-tools/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1664848416 +SHA256 (PDB-REDO-cif-tools-v1.0.3_GH0.tar.gz) = 06cfd420f63821729fc5bccfedec4f240ce88ba1b0d39844aae6fb0c2cdcb340 +SIZE (PDB-REDO-cif-tools-v1.0.3_GH0.tar.gz) = 28264 diff --git a/science/cif-tools/files/patch-src_mmCQL.cpp b/science/cif-tools/files/patch-src_mmCQL.cpp new file mode 100644 index 000000000000..33087df8b984 --- /dev/null +++ b/science/cif-tools/files/patch-src_mmCQL.cpp @@ -0,0 +1,10 @@ +--- src/mmCQL.cpp.orig 2022-10-04 01:58:30 UTC ++++ src/mmCQL.cpp +@@ -29,6 +29,7 @@ + #include <fstream> + #include <filesystem> + #include <functional> ++#include <stack> + #include <unordered_set> + + #include <boost/program_options.hpp> diff --git a/science/cif-tools/pkg-descr b/science/cif-tools/pkg-descr new file mode 100644 index 000000000000..b9290f3f0d89 --- /dev/null +++ b/science/cif-tools/pkg-descr @@ -0,0 +1,2 @@ +The cif-tools suite of programs are tools you can use to examine and manipulate +mmCIF and PDB files. diff --git a/science/cif-tools/pkg-plist b/science/cif-tools/pkg-plist new file mode 100644 index 000000000000..5a17a0019703 --- /dev/null +++ b/science/cif-tools/pkg-plist @@ -0,0 +1,16 @@ +bin/cif-diff +bin/cif-drop +bin/cif-grep +bin/cif-merge +bin/cif-validate +bin/cif2pdb +bin/mmCQL +bin/pdb2cif +share/man/man1/cif-diff.1.gz +share/man/man1/cif-drop.1.gz +share/man/man1/cif-grep.1.gz +share/man/man1/cif-merge.1.gz +share/man/man1/cif-validate.1.gz +share/man/man1/cif2pdb.1.gz +share/man/man1/mmCQL.1.gz +share/man/man1/pdb2cif.1.gz |