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authorJason W. Bacon <jwb@FreeBSD.org>2021-06-11 14:55:54 +0000
committerJason W. Bacon <jwb@FreeBSD.org>2021-06-11 15:05:18 +0000
commit874cf7c2593df5d25830b1a6292d0474f8647d5d (patch)
tree985e7fd0bbe6b085d01be4d9d5b248e406218b63
parent495634f580bdb5bf7020c53ef98d348ad682bb86 (diff)
downloadports-874cf7c2593df5d25830b1a6292d0474f8647d5d.tar.gz
ports-874cf7c2593df5d25830b1a6292d0474f8647d5d.zip
biology/ad2vcf: Update to 0.1.3
Updates for new biolibc API Changes: https://github.com/auerlab/ad2vcf/releases
-rw-r--r--biology/ad2vcf/Makefile6
-rw-r--r--biology/ad2vcf/distinfo6
-rw-r--r--biology/ad2vcf/pkg-descr6
3 files changed, 9 insertions, 9 deletions
diff --git a/biology/ad2vcf/Makefile b/biology/ad2vcf/Makefile
index d876777451f7..591504584ab5 100644
--- a/biology/ad2vcf/Makefile
+++ b/biology/ad2vcf/Makefile
@@ -1,5 +1,7 @@
+# Created by: Jason Bacon <jwb@FreeBSD.org>
+
PORTNAME= ad2vcf
-DISTVERSION= 0.1.2
+DISTVERSION= 0.1.3
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@@ -8,7 +10,7 @@ COMMENT= Add allelic depth info from a SAM stream to a VCF file
LICENSE= BSD2CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
-BUILD_DEPENDS= biolibc>=0.1.1:biology/biolibc
+LIB_DEPENDS= libbiolibc.so:biology/biolibc libxtend.so:devel/libxtend
USE_GITHUB= yes
GH_ACCOUNT= auerlab
diff --git a/biology/ad2vcf/distinfo b/biology/ad2vcf/distinfo
index 649dbb04a74c..ea97b8dc87a1 100644
--- a/biology/ad2vcf/distinfo
+++ b/biology/ad2vcf/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1616510305
-SHA256 (auerlab-ad2vcf-0.1.2_GH0.tar.gz) = e85e221c69748082799f5b048412136d28a0395290b16728500fe30190eaea84
-SIZE (auerlab-ad2vcf-0.1.2_GH0.tar.gz) = 15204
+TIMESTAMP = 1623420872
+SHA256 (auerlab-ad2vcf-0.1.3_GH0.tar.gz) = 062e355c0de2d6351c099eb1004a19473140838476358cb66670de5f557043ea
+SIZE (auerlab-ad2vcf-0.1.3_GH0.tar.gz) = 14484
diff --git a/biology/ad2vcf/pkg-descr b/biology/ad2vcf/pkg-descr
index 21df7c875513..16def19e923e 100644
--- a/biology/ad2vcf/pkg-descr
+++ b/biology/ad2vcf/pkg-descr
@@ -1,6 +1,4 @@
-ad2vdf extracts allelic depth info from a SAM stream and adds it to a
-corresponding single-sample VCF file. SAM input is read via stdin and the VCF
-input file is taken as a command-line argument. This allows expensive BAM/CRAM
-decoding to be performed in parallel by a separate samtools process.
+ad2vcf extracts allelic depth info from a SAM stream and adds it to a
+corresponding single-sample VCF file.
WWW: https://github.com/auerlab/ad2vcf