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authorFernando ApesteguĂ­a <fernape@FreeBSD.org>2021-12-19 17:26:27 +0000
committerFernando ApesteguĂ­a <fernape@FreeBSD.org>2021-12-20 13:10:18 +0000
commit88963ff54fdbd8b44030bac7b86382f784ed2399 (patch)
treeaf4977cd20042914f5f7b5cd576c1802543a2f5f
parentb2dab386316742576c3fc3fd7a3ed0284c919683 (diff)
downloadports-88963ff54fdbd8b44030bac7b86382f784ed2399.tar.gz
ports-88963ff54fdbd8b44030bac7b86382f784ed2399.zip
science/afni: update to 21.3.12
-rw-r--r--science/afni/Makefile2
-rw-r--r--science/afni/distinfo6
-rw-r--r--science/afni/files/patch-crorden_dcm2niix__console_makefile24
-rw-r--r--science/afni/pkg-plist3
4 files changed, 16 insertions, 19 deletions
diff --git a/science/afni/Makefile b/science/afni/Makefile
index 9f50ca94a6fb..034fbe633448 100644
--- a/science/afni/Makefile
+++ b/science/afni/Makefile
@@ -1,6 +1,6 @@
PORTNAME= afni
DISTVERSIONPREFIX= AFNI_
-DISTVERSION= 21.3.10
+DISTVERSION= 21.3.12
CATEGORIES= science biology graphics perl5 python
MAINTAINER= fernape@FreeBSD.org
diff --git a/science/afni/distinfo b/science/afni/distinfo
index 57e824db6bd6..372791ae2123 100644
--- a/science/afni/distinfo
+++ b/science/afni/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1638970395
-SHA256 (afni-afni-AFNI_21.3.10_GH0.tar.gz) = 1efe11a0a232e6b1c58f77f1323e73abd0af41d727fa279fbab4b13fd204b98c
-SIZE (afni-afni-AFNI_21.3.10_GH0.tar.gz) = 43847925
+TIMESTAMP = 1639850671
+SHA256 (afni-afni-AFNI_21.3.12_GH0.tar.gz) = a30d5d5f5f0e004f5e724159e886e3a261674084d3d694fc3677bd5eeafcb9b3
+SIZE (afni-afni-AFNI_21.3.12_GH0.tar.gz) = 43864911
diff --git a/science/afni/files/patch-crorden_dcm2niix__console_makefile b/science/afni/files/patch-crorden_dcm2niix__console_makefile
index 5c34e38e062f..3fbb4ece924e 100644
--- a/science/afni/files/patch-crorden_dcm2niix__console_makefile
+++ b/science/afni/files/patch-crorden_dcm2niix__console_makefile
@@ -1,26 +1,22 @@
---- crorden/dcm2niix_console/makefile.orig 2021-11-08 00:47:00 UTC
+--- crorden/dcm2niix_console/makefile.orig 2021-12-19 17:24:45 UTC
+++ crorden/dcm2niix_console/makefile
-@@ -1,8 +1,8 @@
+@@ -1,5 +1,5 @@
# Regular use
-CFLAGS=-s -O3
-+CXXFLAGS?=-s -O3
++CXXFLAGS=-s -O3
# Debugging
--#CFLAGS=-g
-+#CXXFLAGS=-g
-
- #Leak tests:
- # https://clang.llvm.org/docs/AddressSanitizer.html
-@@ -21,7 +21,7 @@ ifneq ($(OS),Windows_NT)
- ifeq "$(OS)" "Darwin"
+ #CFLAGS=-g
+@@ -22,7 +22,7 @@ ifneq ($(OS),Windows_NT)
#CFLAGS=-dead_strip -O3
- #CFLAGS= -O3
-- CFLAGS=-O3 -sectcreate __TEXT __info_plist Info.plist
-+ CXXFLAGS=-O3 -sectcreate __TEXT __info_plist Info.plist
+ # ponder -sectcreate later [rickr]
+ # CFLAGS=-O3 -sectcreate __TEXT __info_plist Info.plist
+- CFLAGS= -O3
++ CXXFLAGS= -O3
#Apple notarization requires a Info.plist
# For .app bundles, the Info.plist is a separate file, for executables it is appended as a section
#you can check that the Info.plist section has been inserted with either of these commands
-@@ -31,4 +31,4 @@ ifneq ($(OS),Windows_NT)
+@@ -32,4 +32,4 @@ ifneq ($(OS),Windows_NT)
endif
endif
all:
diff --git a/science/afni/pkg-plist b/science/afni/pkg-plist
index 0fe645395137..3f338117d268 100644
--- a/science/afni/pkg-plist
+++ b/science/afni/pkg-plist
@@ -232,6 +232,7 @@ bin/3ddelay
bin/3ddot
bin/3ddot_beta
bin/3dedge3
+bin/3dedgedog
bin/3dfim+
bin/3dfractionize
bin/3dhistog
@@ -680,7 +681,7 @@ include/afni/rcmat.h
include/afni/tagset.h
include/afni/thd_atlas.h
include/afni/thd_compress.h
-include/afni/thd_depth.h
+include/afni/thd_edge_dog.h
include/afni/thd_euler_dist.h
include/afni/thd_iochan.h
include/afni/thd_maker.h