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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2026-03-05 13:29:48 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2026-03-05 13:31:18 +0000 |
| commit | 9c59e8acfec3e87d6ddf912d0f25a27571427f23 (patch) | |
| tree | 52350190911e426da90134eecafa45c8a976e72e | |
| parent | ba228127a00d8e3638b1c70349e7697040f8883c (diff) | |
biology/py-macs3: Update to 3.0.4
A few fixes and enhancements
Changes: https://github.com/macs3-project/MACS/releases
Reported by: portscout
| -rw-r--r-- | biology/py-macs3/Makefile | 6 | ||||
| -rw-r--r-- | biology/py-macs3/distinfo | 6 | ||||
| -rw-r--r-- | biology/py-macs3/files/patch-pyproject.toml | 14 | ||||
| -rw-r--r-- | biology/py-macs3/files/patch-requirements.txt | 4 |
4 files changed, 20 insertions, 10 deletions
diff --git a/biology/py-macs3/Makefile b/biology/py-macs3/Makefile index 9e80cf787df6..697cda306f9b 100644 --- a/biology/py-macs3/Makefile +++ b/biology/py-macs3/Makefile @@ -1,6 +1,6 @@ PORTNAME= MACS3 DISTVERSIONPREFIX= v -DISTVERSION= 3.0.3 +DISTVERSION= 3.0.4 CATEGORIES= biology python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -20,7 +20,9 @@ COMMON_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=1.3:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hmmlearn>=0.3.2:math/py-hmmlearn@${PY_FLAVOR} BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}setuptools>=0:devel/py-setuptools@${PY_FLAVOR} \ simde>0:devel/simde \ + ${PYTHON_PKGNAMEPREFIX}cython>0:lang/cython \ ${COMMON_DEPENDS} RUN_DEPENDS= ${COMMON_DEPENDS} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \ @@ -29,7 +31,7 @@ TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \ USES= localbase perl5 python shebangfix USE_GITHUB= yes USE_PERL5= test -USE_PYTHON= autoplist concurrent cython distutils +USE_PYTHON= autoplist concurrent distutils GH_ACCOUNT= macs3-project GH_PROJECT= MACS diff --git a/biology/py-macs3/distinfo b/biology/py-macs3/distinfo index f02adff90730..643ab3644b4e 100644 --- a/biology/py-macs3/distinfo +++ b/biology/py-macs3/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1740145847 -SHA256 (macs3-project-MACS-v3.0.3_GH0.tar.gz) = fb5cfe3d8189662b79df7c96f7782bc8327f1aafa61815a2ac86a8337917a558 -SIZE (macs3-project-MACS-v3.0.3_GH0.tar.gz) = 198064648 +TIMESTAMP = 1772212991 +SHA256 (macs3-project-MACS-v3.0.4_GH0.tar.gz) = e74ac701dbff16ea8dddc82d7431e8e6648a9fb2d99b8b7cd4fe6577f53692c8 +SIZE (macs3-project-MACS-v3.0.4_GH0.tar.gz) = 200470087 diff --git a/biology/py-macs3/files/patch-pyproject.toml b/biology/py-macs3/files/patch-pyproject.toml index 262eb251f817..40c429df69a5 100644 --- a/biology/py-macs3/files/patch-pyproject.toml +++ b/biology/py-macs3/files/patch-pyproject.toml @@ -1,9 +1,17 @@ ---- pyproject.toml.orig 2025-02-20 03:43:04 UTC +--- pyproject.toml.orig 2026-02-22 22:11:36 UTC +++ pyproject.toml @@ -1,5 +1,5 @@ [build-system] --requires=['setuptools>=68.0', 'numpy>=1.25', 'scipy>=1.12', 'cykhash>=2.0', 'Cython>=3.0', 'scikit-learn>=1.3', 'hmmlearn>=0.3.2'] -+requires=['setuptools>=63.0', 'numpy>=1.25', 'scipy>=1.11.1', 'cykhash>=2.0', 'Cython>=0.29.37', 'scikit-learn>=1.3', 'hmmlearn>=0.3.2'] +-requires=['setuptools>=80.0', 'numpy>=1.25', 'scipy>=1.12', 'cykhash>=2.0', 'Cython>=3.0', 'scikit-learn>=1.3', 'hmmlearn>=0.3.2'] ++requires=['setuptools>=63.0', 'numpy>=1.25', 'scipy>=1.11.1', 'cykhash>=2.0', 'Cython>=3.0', 'scikit-learn>=1.3', 'hmmlearn>=0.3.2'] build-backend = "setuptools.build_meta" [project] +@@ -10,7 +10,6 @@ requires-python = ">=3.9" + {name = "Philippa Doherty", email = "Philippa.Doherty@RoswellPark.org"}] + readme = "README.md" + requires-python = ">=3.9" +-license = "BSD-3-Clause" + classifiers =['Development Status :: 5 - Production/Stable', + 'Environment :: Console', + 'Intended Audience :: Developers', diff --git a/biology/py-macs3/files/patch-requirements.txt b/biology/py-macs3/files/patch-requirements.txt index 474854166d3c..4350e4b71051 100644 --- a/biology/py-macs3/files/patch-requirements.txt +++ b/biology/py-macs3/files/patch-requirements.txt @@ -1,8 +1,8 @@ ---- requirements.txt.orig 2025-02-20 03:43:04 UTC +--- requirements.txt.orig 2026-02-22 22:11:36 UTC +++ requirements.txt @@ -1,8 +1,8 @@ -Cython>=3.0,<3.1 -+Cython>=0.29.37 ++Cython>=3.0 numpy>=1.25 -scipy>=1.12 +scipy>=1.11.1 |