math/py-mathics: upgrade to 6.0.1

Release notes at
	<https://github.com/Mathics3/mathics-core/releases/tag/6.0.1>.

5 files changed, 270 insertions, 179 deletions

diff --git a/math/py-mathics/Makefile b/math/py-mathics/Makefile
index 5ab3bc487f85..aaccf1d6c68a 100644
--- a/math/py-mathics/Makefile
+++ b/math/py-mathics/Makefile
@@ -1,6 +1,5 @@
 PORTNAME=	Mathics3
-PORTVERSION=	5.0.2
-PORTREVISION=	3
+PORTVERSION=	6.0.1
 CATEGORIES=	math python
 MASTER_SITES=	PYPI
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
@@ -12,6 +11,7 @@ WWW=		https://mathics.org/
 LICENSE=	GPLv3
 
 BUILD_DEPENDS=	${PYNUMPY}	\
+		${PY_PILLOW}	\
 		${PYTHON_PKGNAMEPREFIX}cython>0:lang/cython@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pint>0:devel/py-pint@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}sympy>0:math/py-sympy@${PY_FLAVOR} \
@@ -25,6 +25,7 @@ BUILD_DEPENDS=	${PYNUMPY}	\
 		${PYTHON_PKGNAMEPREFIX}scikit-image>0:graphics/py-scikit-image@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}Mathics_Scanner>0:math/py-mathics-scanner
 RUN_DEPENDS=	${PYNUMPY}	\
+		${PY_PILLOW}	\
 		bash:shells/bash	\
 		${PYTHON_PKGNAMEPREFIX}py>0:devel/py-py@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}lxml>0:devel/py-lxml@${PY_FLAVOR} \
@@ -37,6 +38,7 @@ RUN_DEPENDS=	${PYNUMPY}	\
 		${PYTHON_PKGNAMEPREFIX}nltk>0:textproc/py-nltk@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pyaml>0:textproc/py-pyaml@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pydot>0:graphics/py-pydot@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}pyocr>0:graphics/py-pyocr@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}langid>0:textproc/py-langid@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR} \
diff --git a/math/py-mathics/distinfo b/math/py-mathics/distinfo
index 2b5d998740c4..676c76a4c6b0 100644
--- a/math/py-mathics/distinfo
+++ b/math/py-mathics/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1659804627
-SHA256 (Mathics3-5.0.2.tar.gz) = 659293bf49c9654c6350bb2a26d1edc0bde79d0fed280e0ebc18a585cca6f2b5
-SIZE (Mathics3-5.0.2.tar.gz) = 2891427
+TIMESTAMP = 1679047723
+SHA256 (Mathics3-6.0.1.tar.gz) = e96d6ba0e0efa79744add26b6fc081281a0b650f465ca5ac81f4885743a0eae1
+SIZE (Mathics3-6.0.1.tar.gz) = 2977178
diff --git a/math/py-mathics/files/patch-Mathics3.egg-info_requires.txt b/math/py-mathics/files/patch-Mathics3.egg-info_requires.txt
index 76492469ca4e..bda1dc309962 100644
--- a/math/py-mathics/files/patch-Mathics3.egg-info_requires.txt
+++ b/math/py-mathics/files/patch-Mathics3.egg-info_requires.txt
@@ -1,11 +1,9 @@
---- Mathics3.egg-info/requires.txt.orig	2022-08-06 09:38:06 UTC
+--- Mathics3.egg-info/requires.txt.orig	2023-03-05 10:15:02 UTC
 +++ Mathics3.egg-info/requires.txt
-@@ -1,7 +1,7 @@
- Mathics-Scanner<1.3.0,>=1.2.1
- numpy
+@@ -1,5 +1,5 @@
+ Mathics-Scanner>=1.3.0
+-numpy<=1.24
++numpy<1.25
  llvmlite
--sympy<1.11,>=1.8
-+sympy<1.11.2,>=1.8
- recordclass
- Mathics_Scanner<1.3.0,>=1.2.1
- mpmath>=1.2.0
+ sympy<1.12,>=1.8
+ pillow>=9.2
diff --git a/math/py-mathics/files/patch-setup.py b/math/py-mathics/files/patch-setup.py
index 0b3460f039fa..65e7100eff57 100644
--- a/math/py-mathics/files/patch-setup.py
+++ b/math/py-mathics/files/patch-setup.py
@@ -1,11 +1,11 @@
---- setup.py.orig	2023-01-20 17:32:12 UTC
+--- setup.py.orig	2023-03-17 10:22:19 UTC
 +++ setup.py
-@@ -57,7 +57,7 @@ elif sys.version_info[:2] == (3, 6):
- elif sys.version_info[:2] == (3, 7):
-     INSTALL_REQUIRES += ["numpy<1.22", "llvmlite", "sympy>=1.8, < 1.11"]
+@@ -64,7 +64,7 @@ elif sys.version_info[:2] == (3, 6):
+         sys.exit(-1)
  else:
--    INSTALL_REQUIRES += ["numpy", "llvmlite", "sympy>=1.8, < 1.11"]
-+    INSTALL_REQUIRES += ["numpy", "llvmlite", "sympy>=1.8, < 1.11.2"]
- 
- if not is_PyPy:
-     INSTALL_REQUIRES += ["recordclass"]
+     INSTALL_REQUIRES += [
+-        "numpy<=1.24",
++        "numpy<=1.25",
+         "llvmlite",
+         "sympy>=1.8, < 1.12",
+         "pillow >= 9.2",
diff --git a/math/py-mathics/pkg-plist b/math/py-mathics/pkg-plist
index 0181f9c64551..82f69391f6de 100644
--- a/math/py-mathics/pkg-plist
+++ b/math/py-mathics/pkg-plist
@@ -4,8 +4,6 @@ bin/mathics
 %%PYTHON_SITELIBDIR%%/mathics/__pycache__/__init__.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/__pycache__/benchmark.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/__pycache__/benchmark.cpython-%%PYTHON_SUFFIX%%.pyc
-%%PYTHON_SITELIBDIR%%/mathics/__pycache__/docbug.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
-%%PYTHON_SITELIBDIR%%/mathics/__pycache__/docbug.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/__pycache__/docpipeline.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/__pycache__/docpipeline.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/__pycache__/main.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
@@ -18,6 +16,8 @@ bin/mathics
 %%PYTHON_SITELIBDIR%%/mathics/__pycache__/settings.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/__pycache__/system_info.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/__pycache__/system_info.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/mathics/__pycache__/timing.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
+%%PYTHON_SITELIBDIR%%/mathics/__pycache__/timing.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/__pycache__/version.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/__pycache__/version.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/algorithm/__init__.py
@@ -31,8 +31,6 @@ bin/mathics
 %%PYTHON_SITELIBDIR%%/mathics/algorithm/__pycache__/introselect.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/algorithm/__pycache__/optimizers.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/algorithm/__pycache__/optimizers.cpython-%%PYTHON_SUFFIX%%.pyc
-%%PYTHON_SITELIBDIR%%/mathics/algorithm/__pycache__/parts.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
-%%PYTHON_SITELIBDIR%%/mathics/algorithm/__pycache__/parts.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/algorithm/__pycache__/series.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/algorithm/__pycache__/series.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/algorithm/__pycache__/simplify.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
@@ -41,7 +39,6 @@ bin/mathics
 %%PYTHON_SITELIBDIR%%/mathics/algorithm/integrators.py
 %%PYTHON_SITELIBDIR%%/mathics/algorithm/introselect.py
 %%PYTHON_SITELIBDIR%%/mathics/algorithm/optimizers.py
-%%PYTHON_SITELIBDIR%%/mathics/algorithm/parts.py
 %%PYTHON_SITELIBDIR%%/mathics/algorithm/series.py
 %%PYTHON_SITELIBDIR%%/mathics/algorithm/simplify.py
 %%PYTHON_SITELIBDIR%%/mathics/autoload-cli/settings.m
@@ -72,8 +69,6 @@ bin/mathics
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/base.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/codetables.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/codetables.cpython-%%PYTHON_SUFFIX%%.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/comparison.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/comparison.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/compilation.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/compilation.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/compress.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
@@ -82,22 +77,22 @@ bin/mathics
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/datentime.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/evaluation.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/evaluation.cpython-%%PYTHON_SUFFIX%%.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/exceptions.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/exceptions.cpython-%%PYTHON_SUFFIX%%.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/functional.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/functional.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/graphics.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/graphics.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/inference.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/inference.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/inout.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/inout.cpython-%%PYTHON_SUFFIX%%.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/lists.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/lists.cpython-%%PYTHON_SUFFIX%%.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/logic.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/logic.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/layout.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
+%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/layout.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/mainloop.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
+%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/mainloop.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/makeboxes.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
+%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/makeboxes.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/manipulate.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/manipulate.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/messages.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
+%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/messages.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/numeric.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/numeric.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/optimization.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
@@ -112,6 +107,8 @@ bin/mathics
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/physchemdata.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/procedural.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/procedural.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/quantities-try.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
+%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/quantities-try.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/quantities.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/quantities.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/recurrence.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
@@ -120,8 +117,6 @@ bin/mathics
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/scoping.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/sparse.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/sparse.cpython-%%PYTHON_SUFFIX%%.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/structure.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/structure.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/system.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/system.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/__pycache__/tensors.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
@@ -148,8 +143,6 @@ bin/mathics
 %%PYTHON_SITELIBDIR%%/mathics/builtin/assignments/__pycache__/assignment.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/assignments/__pycache__/clear.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/assignments/__pycache__/clear.cpython-%%PYTHON_SUFFIX%%.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/assignments/__pycache__/internals.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/assignments/__pycache__/internals.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/assignments/__pycache__/types.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/assignments/__pycache__/types.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/assignments/__pycache__/upvalues.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
@@ -157,7 +150,6 @@ bin/mathics
 %%PYTHON_SITELIBDIR%%/mathics/builtin/assignments/assign_binaryop.py
 %%PYTHON_SITELIBDIR%%/mathics/builtin/assignments/assignment.py
 %%PYTHON_SITELIBDIR%%/mathics/builtin/assignments/clear.py
-%%PYTHON_SITELIBDIR%%/mathics/builtin/assignments/internals.py
 %%PYTHON_SITELIBDIR%%/mathics/builtin/assignments/types.py
 %%PYTHON_SITELIBDIR%%/mathics/builtin/assignments/upvalues.py
 %%PYTHON_SITELIBDIR%%/mathics/builtin/atomic/__init__.py
@@ -197,21 +189,24 @@ bin/mathics
 %%PYTHON_SITELIBDIR%%/mathics/builtin/box/__pycache__/__init__.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/box/__pycache__/compilation.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/box/__pycache__/compilation.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/mathics/builtin/box/__pycache__/expression.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
+%%PYTHON_SITELIBDIR%%/mathics/builtin/box/__pycache__/expression.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/box/__pycache__/graphics.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/box/__pycache__/graphics.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/box/__pycache__/graphics3d.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/box/__pycache__/graphics3d.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/box/__pycache__/image.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/box/__pycache__/image.cpython-%%PYTHON_SUFFIX%%.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/box/__pycache__/inout.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/box/__pycache__/inout.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/mathics/builtin/box/__pycache__/layout.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
+%%PYTHON_SITELIBDIR%%/mathics/builtin/box/__pycache__/layout.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/box/__pycache__/uniform_polyhedra.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/box/__pycache__/uniform_polyhedra.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/mathics/builtin/box/compilation.py
+%%PYTHON_SITELIBDIR%%/mathics/builtin/box/expression.py
 %%PYTHON_SITELIBDIR%%/mathics/builtin/box/graphics.py
 %%PYTHON_SITELIBDIR%%/mathics/builtin/box/graphics3d.py
 %%PYTHON_SITELIBDIR%%/mathics/builtin/box/image.py
-%%PYTHON_SITELIBDIR%%/mathics/builtin/box/inout.py
+%%PYTHON_SITELIBDIR%%/mathics/builtin/box/layout.py
 %%PYTHON_SITELIBDIR%%/mathics/builtin/box/uniform_polyhedra.py
 %%PYTHON_SITELIBDIR%%/mathics/builtin/codetables.py
 %%PYTHON_SITELIBDIR%%/mathics/builtin/colors/__init__.py
@@ -229,35 +224,19 @@ bin/mathics
 %%PYTHON_SITELIBDIR%%/mathics/builtin/colors/color_internals.py
 %%PYTHON_SITELIBDIR%%/mathics/builtin/colors/color_operations.py
 %%PYTHON_SITELIBDIR%%/mathics/builtin/colors/named_colors.py
-%%PYTHON_SITELIBDIR%%/mathics/builtin/comparison.py
 %%PYTHON_SITELIBDIR%%/mathics/builtin/compilation.py
-%%PYTHON_SITELIBDIR%%/mathics/builtin/compile/__init__.py
-%%PYTHON_SITELIBDIR%%/mathics/builtin/compile/__pycache__/__init__.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/compile/__pycache__/__init__.cpython-%%PYTHON_SUFFIX%%.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/compile/__pycache__/base.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/compile/__pycache__/base.cpython-%%PYTHON_SUFFIX%%.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/compile/__pycache__/compile.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
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-%%PYTHON_SITELIBDIR%%/mathics/builtin/compile/__pycache__/ir.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
-%%PYTHON_SITELIBDIR%%/mathics/builtin/compile/__pycache__/ir.cpython-%%PYTHON_SUFFIX%%.pyc
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