biology/seqan3: Update 3.0.3 -> 3.1.0

Reported by:	portscout

3 files changed, 36 insertions, 169 deletions

diff --git a/biology/seqan3/Makefile b/biology/seqan3/Makefile
index c4a9e6453274..b465d96ca305 100644
--- a/biology/seqan3/Makefile
+++ b/biology/seqan3/Makefile
@@ -1,5 +1,5 @@
 PORTNAME=	seqan3
-DISTVERSION=	3.0.3
+DISTVERSION=	3.1.0
 CATEGORIES=	biology devel math
 
 MAINTAINER=	yuri@FreeBSD.org
@@ -18,7 +18,9 @@ USES=		cmake localbase
 
 USE_GITHUB=	yes
 GH_ACCOUNT=	seqan
-GH_TUPLE=	xxsds:sdsl-lite:9a0d567:sdsl_lite/submodules/sdsl-lite
+GH_TUPLE=	xxsds:sdsl-lite:cf9ff4a:sdsl_lite/submodules/sdsl-lite
+
+USE_GCC=	yes # tests only pass with gcc, see https://github.com/seqan/seqan3/issues/2643, otherwise gcc isn't needed because this is a header-only library
 
 TEST_WRKSRC=	${WRKSRC}/.test
 
@@ -27,7 +29,7 @@ NO_ARCH=	yes
 post-install:
 	@${RM} -r ${STAGEDIR}${DOCSDIR}
 
-do-test: # fail: https://github.com/seqan/seqan3/issues/2643
+do-test:
 	@${MKDIR} ${TEST_WRKSRC} && cd ${TEST_WRKSRC} && \
 		${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} ${WRKSRC}/test/unit && \
 		${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \
diff --git a/biology/seqan3/distinfo b/biology/seqan3/distinfo
index 252bac55dbe3..3aaf97f0a829 100644
--- a/biology/seqan3/distinfo
+++ b/biology/seqan3/distinfo
@@ -1,5 +1,5 @@
-TIMESTAMP = 1622351721
-SHA256 (seqan-seqan3-3.0.3_GH0.tar.gz) = 736d7c07759f51b1d6f4ca806dafd219a2a35b0250e018eb038010063d23eecd
-SIZE (seqan-seqan3-3.0.3_GH0.tar.gz) = 1478459
-SHA256 (xxsds-sdsl-lite-9a0d567_GH0.tar.gz) = 1727ec6897535a493b99ff36a6d19d8205964be2b2a027ba547fc77ab7dbd74e
-SIZE (xxsds-sdsl-lite-9a0d567_GH0.tar.gz) = 1156974
+TIMESTAMP = 1636950170
+SHA256 (seqan-seqan3-3.1.0_GH0.tar.gz) = 5dc87c5da064a7d1a5afec96c6c1da79a6d1ec6a045e1fe100166c88f559ce51
+SIZE (seqan-seqan3-3.1.0_GH0.tar.gz) = 1447998
+SHA256 (xxsds-sdsl-lite-cf9ff4a_GH0.tar.gz) = 9e328d00c3bdead09cfa35e75e20ace0e668d6dac0436ce9256f2156088f22e8
+SIZE (xxsds-sdsl-lite-cf9ff4a_GH0.tar.gz) = 1166065
diff --git a/biology/seqan3/pkg-plist b/biology/seqan3/pkg-plist
index 835bf6eba19c..dc4dab769c9a 100644
--- a/biology/seqan3/pkg-plist
+++ b/biology/seqan3/pkg-plist
@@ -2,8 +2,6 @@ include/seqan3/alignment/aligned_sequence/aligned_sequence_concept.hpp
 include/seqan3/alignment/aligned_sequence/all.hpp
 include/seqan3/alignment/aligned_sequence/debug_stream_alignment.hpp
 include/seqan3/alignment/all.hpp
-include/seqan3/alignment/band/all.hpp
-include/seqan3/alignment/band/static_band.hpp
 include/seqan3/alignment/configuration/align_config_band.hpp
 include/seqan3/alignment/configuration/align_config_debug.hpp
 include/seqan3/alignment/configuration/align_config_edit.hpp
@@ -19,17 +17,16 @@ include/seqan3/alignment/configuration/align_config_scoring_scheme.hpp
 include/seqan3/alignment/configuration/align_config_vectorised.hpp
 include/seqan3/alignment/configuration/all.hpp
 include/seqan3/alignment/configuration/detail.hpp
+include/seqan3/alignment/decorator/all.hpp
 include/seqan3/alignment/decorator/gap_decorator.hpp
 include/seqan3/alignment/detail/pairwise_alignment_concept.hpp
 include/seqan3/alignment/exception.hpp
-include/seqan3/alignment/matrix/alignment_coordinate.hpp
-include/seqan3/alignment/matrix/alignment_optimum.hpp
 include/seqan3/alignment/matrix/all.hpp
-include/seqan3/alignment/matrix/debug_matrix.hpp
 include/seqan3/alignment/matrix/detail/advanceable_alignment_coordinate.hpp
 include/seqan3/alignment/matrix/detail/affine_cell_proxy.hpp
 include/seqan3/alignment/matrix/detail/aligned_sequence_builder.hpp
 include/seqan3/alignment/matrix/detail/alignment_matrix_column_major_range_base.hpp
+include/seqan3/alignment/matrix/detail/alignment_optimum.hpp
 include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column.hpp
 include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_banded.hpp
 include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_base.hpp
@@ -41,8 +38,14 @@ include/seqan3/alignment/matrix/detail/alignment_trace_matrix_proxy.hpp
 include/seqan3/alignment/matrix/detail/all.hpp
 include/seqan3/alignment/matrix/detail/combined_score_and_trace_matrix.hpp
 include/seqan3/alignment/matrix/detail/coordinate_matrix.hpp
+include/seqan3/alignment/matrix/detail/debug_matrix.hpp
+include/seqan3/alignment/matrix/detail/edit_distance_score_matrix_full.hpp
+include/seqan3/alignment/matrix/detail/edit_distance_trace_matrix_full.hpp
+include/seqan3/alignment/matrix/detail/matrix_concept.hpp
 include/seqan3/alignment/matrix/detail/matrix_coordinate.hpp
+include/seqan3/alignment/matrix/detail/row_wise_matrix.hpp
 include/seqan3/alignment/matrix/detail/score_matrix_single_column.hpp
+include/seqan3/alignment/matrix/detail/trace_directions.hpp
 include/seqan3/alignment/matrix/detail/trace_iterator.hpp
 include/seqan3/alignment/matrix/detail/trace_iterator_banded.hpp
 include/seqan3/alignment/matrix/detail/trace_iterator_base.hpp
@@ -50,11 +53,6 @@ include/seqan3/alignment/matrix/detail/trace_matrix_full.hpp
 include/seqan3/alignment/matrix/detail/two_dimensional_matrix.hpp
 include/seqan3/alignment/matrix/detail/two_dimensional_matrix_iterator_base.hpp
 include/seqan3/alignment/matrix/detail/two_dimensional_matrix_iterator_concept.hpp
-include/seqan3/alignment/matrix/edit_distance_score_matrix_full.hpp
-include/seqan3/alignment/matrix/edit_distance_trace_matrix_full.hpp
-include/seqan3/alignment/matrix/matrix_concept.hpp
-include/seqan3/alignment/matrix/row_wise_matrix.hpp
-include/seqan3/alignment/matrix/trace_directions.hpp
 include/seqan3/alignment/pairwise/align_pairwise.hpp
 include/seqan3/alignment/pairwise/align_result_selector.hpp
 include/seqan3/alignment/pairwise/alignment_algorithm.hpp
@@ -90,7 +88,6 @@ include/seqan3/alignment/scoring/all.hpp
 include/seqan3/alignment/scoring/aminoacid_scoring_scheme.hpp
 include/seqan3/alignment/scoring/detail/simd_match_mismatch_scoring_scheme.hpp
 include/seqan3/alignment/scoring/detail/simd_matrix_scoring_scheme.hpp
-include/seqan3/alignment/scoring/gap_scheme.hpp
 include/seqan3/alignment/scoring/nucleotide_scoring_scheme.hpp
 include/seqan3/alignment/scoring/scoring_scheme_base.hpp
 include/seqan3/alignment/scoring/scoring_scheme_concept.hpp
@@ -111,7 +108,6 @@ include/seqan3/alphabet/aminoacid/translation_details.hpp
 include/seqan3/alphabet/aminoacid/translation_genetic_code.hpp
 include/seqan3/alphabet/cigar/all.hpp
 include/seqan3/alphabet/cigar/cigar.hpp
-include/seqan3/alphabet/cigar/cigar_op.hpp
 include/seqan3/alphabet/cigar/exposition_only/cigar_operation.hpp
 include/seqan3/alphabet/composite/all.hpp
 include/seqan3/alphabet/composite/alphabet_tuple_base.hpp
@@ -119,6 +115,7 @@ include/seqan3/alphabet/composite/alphabet_variant.hpp
 include/seqan3/alphabet/composite/detail.hpp
 include/seqan3/alphabet/composite/semialphabet_any.hpp
 include/seqan3/alphabet/concept.hpp
+include/seqan3/alphabet/container/all.hpp
 include/seqan3/alphabet/container/bitpacked_sequence.hpp
 include/seqan3/alphabet/container/concatenated_sequences.hpp
 include/seqan3/alphabet/detail/alphabet_proxy.hpp
@@ -143,18 +140,16 @@ include/seqan3/alphabet/nucleotide/nucleotide_base.hpp
 include/seqan3/alphabet/nucleotide/rna15.hpp
 include/seqan3/alphabet/nucleotide/rna4.hpp
 include/seqan3/alphabet/nucleotide/rna5.hpp
-include/seqan3/alphabet/nucleotide/sam_dna16.hpp
 include/seqan3/alphabet/quality/aliases.hpp
 include/seqan3/alphabet/quality/all.hpp
 include/seqan3/alphabet/quality/concept.hpp
 include/seqan3/alphabet/quality/phred42.hpp
 include/seqan3/alphabet/quality/phred63.hpp
-include/seqan3/alphabet/quality/phred68legacy.hpp
 include/seqan3/alphabet/quality/phred68solexa.hpp
 include/seqan3/alphabet/quality/phred94.hpp
 include/seqan3/alphabet/quality/phred_base.hpp
 include/seqan3/alphabet/quality/qualified.hpp
-include/seqan3/alphabet/quality/quality_base.hpp
+include/seqan3/alphabet/range/all.hpp
 include/seqan3/alphabet/range/hash.hpp
 include/seqan3/alphabet/range/sequence.hpp
 include/seqan3/alphabet/structure/all.hpp
@@ -203,29 +198,13 @@ include/seqan3/contrib/stream/gz_ostream.hpp
 include/seqan3/core/add_enum_bitwise_operators.hpp
 include/seqan3/core/algorithm/algorithm_result_generator_range.hpp
 include/seqan3/core/algorithm/all.hpp
-include/seqan3/core/algorithm/bound.hpp
-include/seqan3/core/algorithm/concept.hpp
-include/seqan3/core/algorithm/configuration.hpp
-include/seqan3/core/algorithm/configuration_element_debug_mode.hpp
-include/seqan3/core/algorithm/configuration_element_parallel_mode.hpp
-include/seqan3/core/algorithm/configuration_utility.hpp
 include/seqan3/core/algorithm/detail/algorithm_executor_blocking.hpp
 include/seqan3/core/algorithm/detail/all.hpp
 include/seqan3/core/algorithm/detail/execution_handler_parallel.hpp
 include/seqan3/core/algorithm/detail/execution_handler_sequential.hpp
-include/seqan3/core/algorithm/pipeable_config_element.hpp
 include/seqan3/core/all.hpp
-include/seqan3/core/bit_manipulation.hpp
-include/seqan3/core/char_operations/all.hpp
-include/seqan3/core/char_operations/predicate.hpp
-include/seqan3/core/char_operations/predicate_detail.hpp
-include/seqan3/core/char_operations/pretty_print.hpp
-include/seqan3/core/char_operations/transform.hpp
-include/seqan3/core/common_tuple.hpp
 include/seqan3/core/concept/all.hpp
 include/seqan3/core/concept/cereal.hpp
-include/seqan3/core/concept/core_language.hpp
-include/seqan3/core/concept/tuple.hpp
 include/seqan3/core/configuration/all.hpp
 include/seqan3/core/configuration/configuration.hpp
 include/seqan3/core/configuration/detail/all.hpp
@@ -235,6 +214,7 @@ include/seqan3/core/configuration/detail/configuration_element_parallel_mode.hpp
 include/seqan3/core/configuration/detail/configuration_utility.hpp
 include/seqan3/core/configuration/pipeable_config_element.hpp
 include/seqan3/core/debug_stream.hpp
+include/seqan3/core/debug_stream/all.hpp
 include/seqan3/core/debug_stream/byte.hpp
 include/seqan3/core/debug_stream/debug_stream_type.hpp
 include/seqan3/core/debug_stream/detail/to_string.hpp
@@ -244,35 +224,17 @@ include/seqan3/core/debug_stream/tuple.hpp
 include/seqan3/core/debug_stream/variant.hpp
 include/seqan3/core/detail/all.hpp
 include/seqan3/core/detail/customisation_point.hpp
-include/seqan3/core/detail/debug_stream_alphabet.hpp
-include/seqan3/core/detail/debug_stream_byte.hpp
-include/seqan3/core/detail/debug_stream_optional.hpp
-include/seqan3/core/detail/debug_stream_range.hpp
-include/seqan3/core/detail/debug_stream_tuple.hpp
-include/seqan3/core/detail/debug_stream_type.hpp
-include/seqan3/core/detail/debug_stream_variant.hpp
 include/seqan3/core/detail/deferred_crtp_base.hpp
 include/seqan3/core/detail/empty_type.hpp
-include/seqan3/core/detail/endian.hpp
-include/seqan3/core/detail/int_types.hpp
 include/seqan3/core/detail/is_class_template_declarable.hpp
 include/seqan3/core/detail/iterator_traits.hpp
-include/seqan3/core/detail/pack_algorithm.hpp
 include/seqan3/core/detail/persist_view.hpp
 include/seqan3/core/detail/strong_type.hpp
 include/seqan3/core/detail/template_inspection.hpp
 include/seqan3/core/detail/test_accessor.hpp
-include/seqan3/core/detail/to_string.hpp
 include/seqan3/core/detail/transfer_type_modifier_onto.hpp
-include/seqan3/core/detail/type_inspection.hpp
-include/seqan3/core/math.hpp
-include/seqan3/core/parallel/all.hpp
-include/seqan3/core/parallel/detail/latch.hpp
-include/seqan3/core/parallel/detail/reader_writer_manager.hpp
-include/seqan3/core/parallel/detail/spin_delay.hpp
-include/seqan3/core/parallel/execution.hpp
 include/seqan3/core/platform.hpp
-include/seqan3/core/pod_tuple.hpp
+include/seqan3/core/range/all.hpp
 include/seqan3/core/range/detail/adaptor_base.hpp
 include/seqan3/core/range/detail/adaptor_for_view_without_args.hpp
 include/seqan3/core/range/detail/adaptor_from_functor.hpp
@@ -281,55 +243,9 @@ include/seqan3/core/range/detail/misc.hpp
 include/seqan3/core/range/detail/random_access_iterator.hpp
 include/seqan3/core/range/type_traits.hpp
 include/seqan3/core/semiregular_box.hpp
-include/seqan3/core/simd/all.hpp
-include/seqan3/core/simd/concept.hpp
-include/seqan3/core/simd/debug_stream_simd.hpp
-include/seqan3/core/simd/detail/builtin_simd.hpp
-include/seqan3/core/simd/detail/builtin_simd_intrinsics.hpp
-include/seqan3/core/simd/detail/default_simd_backend.hpp
-include/seqan3/core/simd/detail/default_simd_length.hpp
-include/seqan3/core/simd/detail/simd_algorithm_avx2.hpp
-include/seqan3/core/simd/detail/simd_algorithm_avx512.hpp
-include/seqan3/core/simd/detail/simd_algorithm_sse4.hpp
-include/seqan3/core/simd/simd.hpp
-include/seqan3/core/simd/simd_algorithm.hpp
-include/seqan3/core/simd/simd_traits.hpp
-include/seqan3/core/simd/view_iota_simd.hpp
-include/seqan3/core/simd/view_to_simd.hpp
-include/seqan3/core/tuple_utility.hpp
-include/seqan3/core/type_list/all.hpp
-include/seqan3/core/type_list/traits.hpp
-include/seqan3/core/type_list/type_list.hpp
-include/seqan3/core/type_traits/all.hpp
-include/seqan3/core/type_traits/basic.hpp
-include/seqan3/core/type_traits/concept.hpp
-include/seqan3/core/type_traits/deferred_crtp_base.hpp
-include/seqan3/core/type_traits/function.hpp
-include/seqan3/core/type_traits/iterator.hpp
-include/seqan3/core/type_traits/lazy.hpp
-include/seqan3/core/type_traits/pack.hpp
-include/seqan3/core/type_traits/pre.hpp
-include/seqan3/core/type_traits/range.hpp
-include/seqan3/core/type_traits/template_inspection.hpp
-include/seqan3/core/type_traits/transformation_trait_or.hpp
-include/seqan3/io/alignment_file/all.hpp
-include/seqan3/io/alignment_file/detail.hpp
-include/seqan3/io/alignment_file/format_bam.hpp
-include/seqan3/io/alignment_file/format_sam.hpp
-include/seqan3/io/alignment_file/format_sam_base.hpp
-include/seqan3/io/alignment_file/header.hpp
-include/seqan3/io/alignment_file/input.hpp
-include/seqan3/io/alignment_file/input_format_concept.hpp
-include/seqan3/io/alignment_file/input_options.hpp
-include/seqan3/io/alignment_file/misc.hpp
-include/seqan3/io/alignment_file/output.hpp
-include/seqan3/io/alignment_file/output_format_concept.hpp
-include/seqan3/io/alignment_file/output_options.hpp
-include/seqan3/io/alignment_file/sam_tag_dictionary.hpp
 include/seqan3/io/all.hpp
 include/seqan3/io/detail/ignore_output_iterator.hpp
 include/seqan3/io/detail/in_file_iterator.hpp
-include/seqan3/io/detail/istreambuf_view.hpp
 include/seqan3/io/detail/magic_header.hpp
 include/seqan3/io/detail/misc.hpp
 include/seqan3/io/detail/misc_input.hpp
@@ -338,10 +254,6 @@ include/seqan3/io/detail/out_file_iterator.hpp
 include/seqan3/io/detail/record.hpp
 include/seqan3/io/detail/record_like.hpp
 include/seqan3/io/detail/safe_filesystem_entry.hpp
-include/seqan3/io/detail/take_exactly_view.hpp
-include/seqan3/io/detail/take_line_view.hpp
-include/seqan3/io/detail/take_until_view.hpp
-include/seqan3/io/detail/take_view.hpp
 include/seqan3/io/exception.hpp
 include/seqan3/io/record.hpp
 include/seqan3/io/sam_file/all.hpp
@@ -376,7 +288,6 @@ include/seqan3/io/stream/concept.hpp
 include/seqan3/io/stream/detail/fast_istreambuf_iterator.hpp
 include/seqan3/io/stream/detail/fast_ostreambuf_iterator.hpp
 include/seqan3/io/stream/detail/stream_buffer_exposer.hpp
-include/seqan3/io/stream/iterator.hpp
 include/seqan3/io/structure_file/all.hpp
 include/seqan3/io/structure_file/detail.hpp
 include/seqan3/io/structure_file/format_vienna.hpp
@@ -387,64 +298,12 @@ include/seqan3/io/structure_file/output.hpp
 include/seqan3/io/structure_file/output_format_concept.hpp
 include/seqan3/io/structure_file/output_options.hpp
 include/seqan3/io/structure_file/record.hpp
+include/seqan3/io/views/all.hpp
 include/seqan3/io/views/async_input_buffer.hpp
-include/seqan3/range/all.hpp
-include/seqan3/range/concept.hpp
-include/seqan3/range/container/aligned_allocator.hpp
-include/seqan3/range/container/all.hpp
-include/seqan3/range/container/bitcompressed_vector.hpp
-include/seqan3/range/container/concatenated_sequences.hpp
-include/seqan3/range/container/concept.hpp
-include/seqan3/range/container/dynamic_bitset.hpp
-include/seqan3/range/container/small_string.hpp
-include/seqan3/range/container/small_vector.hpp
-include/seqan3/range/decorator/all.hpp
-include/seqan3/range/decorator/gap_decorator.hpp
-include/seqan3/range/detail/inherited_iterator_base.hpp
-include/seqan3/range/detail/misc.hpp
-include/seqan3/range/detail/random_access_iterator.hpp
-include/seqan3/range/hash.hpp
-include/seqan3/range/shortcuts.hpp
-include/seqan3/range/views/all.hpp
-include/seqan3/range/views/as_const.hpp
-include/seqan3/range/views/async_input_buffer.hpp
-include/seqan3/range/views/char_to.hpp
-include/seqan3/range/views/chunk.hpp
-include/seqan3/range/views/complement.hpp
-include/seqan3/range/views/convert.hpp
-include/seqan3/range/views/deep.hpp
-include/seqan3/range/views/detail.hpp
-include/seqan3/range/views/drop.hpp
-include/seqan3/range/views/enforce_random_access.hpp
-include/seqan3/range/views/get.hpp
-include/seqan3/range/views/interleave.hpp
-include/seqan3/range/views/istreambuf.hpp
-include/seqan3/range/views/join.hpp
-include/seqan3/range/views/kmer_hash.hpp
-include/seqan3/range/views/minimiser.hpp
-include/seqan3/range/views/minimiser_hash.hpp
-include/seqan3/range/views/move.hpp
-include/seqan3/range/views/pairwise_combine.hpp
-include/seqan3/range/views/persist.hpp
-include/seqan3/range/views/rank_to.hpp
-include/seqan3/range/views/repeat.hpp
-include/seqan3/range/views/repeat_n.hpp
-include/seqan3/range/views/single_pass_input.hpp
-include/seqan3/range/views/slice.hpp
-include/seqan3/range/views/take.hpp
-include/seqan3/range/views/take_exactly.hpp
-include/seqan3/range/views/take_line.hpp
-include/seqan3/range/views/take_until.hpp
-include/seqan3/range/views/to.hpp
-include/seqan3/range/views/to_char.hpp
-include/seqan3/range/views/to_lower.hpp
-include/seqan3/range/views/to_rank.hpp
-include/seqan3/range/views/to_upper.hpp
-include/seqan3/range/views/translate.hpp
-include/seqan3/range/views/translate_join.hpp
-include/seqan3/range/views/trim_quality.hpp
-include/seqan3/range/views/type_reduce.hpp
-include/seqan3/range/views/zip.hpp
+include/seqan3/io/views/detail/istreambuf_view.hpp
+include/seqan3/io/views/detail/take_exactly_view.hpp
+include/seqan3/io/views/detail/take_line_view.hpp
+include/seqan3/io/views/detail/take_until_view.hpp
 include/seqan3/search/all.hpp
 include/seqan3/search/configuration/all.hpp
 include/seqan3/search/configuration/default_configuration.hpp
@@ -477,6 +336,7 @@ include/seqan3/search/kmer_index/all.hpp
 include/seqan3/search/kmer_index/shape.hpp
 include/seqan3/search/search.hpp
 include/seqan3/search/search_result.hpp
+include/seqan3/search/views/all.hpp
 include/seqan3/search/views/kmer_hash.hpp
 include/seqan3/search/views/minimiser.hpp
 include/seqan3/search/views/minimiser_hash.hpp
@@ -492,7 +352,6 @@ include/seqan3/std/ranges
 include/seqan3/std/span
 include/seqan3/std/type_traits
 include/seqan3/submodules/sdsl-lite/include/sdsl/.gitignore
-include/seqan3/submodules/sdsl-lite/include/sdsl/CMakeLists.txt
 include/seqan3/submodules/sdsl-lite/include/sdsl/bit_vector_il.hpp
 include/seqan3/submodules/sdsl-lite/include/sdsl/bit_vectors.hpp
 include/seqan3/submodules/sdsl-lite/include/sdsl/bits.hpp
@@ -613,13 +472,15 @@ include/seqan3/utility/char_operations/predicate.hpp
 include/seqan3/utility/char_operations/predicate_detail.hpp
 include/seqan3/utility/char_operations/pretty_print.hpp
 include/seqan3/utility/char_operations/transform.hpp
+include/seqan3/utility/concept/all.hpp
+include/seqan3/utility/concept/exposition_only/core_language.hpp
 include/seqan3/utility/container/aligned_allocator.hpp
+include/seqan3/utility/container/all.hpp
 include/seqan3/utility/container/concept.hpp
 include/seqan3/utility/container/dynamic_bitset.hpp
 include/seqan3/utility/container/small_string.hpp
 include/seqan3/utility/container/small_vector.hpp
 include/seqan3/utility/detail/bits_of.hpp
-include/seqan3/utility/detail/exposition_only_concept.hpp
 include/seqan3/utility/detail/integer_traits.hpp
 include/seqan3/utility/detail/multi_invocable.hpp
 include/seqan3/utility/detail/to_little_endian.hpp
@@ -630,6 +491,7 @@ include/seqan3/utility/parallel/detail/all.hpp
 include/seqan3/utility/parallel/detail/latch.hpp
 include/seqan3/utility/parallel/detail/reader_writer_manager.hpp
 include/seqan3/utility/parallel/detail/spin_delay.hpp
+include/seqan3/utility/range/all.hpp
 include/seqan3/utility/range/concept.hpp
 include/seqan3/utility/simd/algorithm.hpp
 include/seqan3/utility/simd/all.hpp
@@ -644,6 +506,7 @@ include/seqan3/utility/simd/detail/simd_algorithm_avx512.hpp
 include/seqan3/utility/simd/detail/simd_algorithm_sse4.hpp
 include/seqan3/utility/simd/simd.hpp
 include/seqan3/utility/simd/simd_traits.hpp
+include/seqan3/utility/simd/views/all.hpp
 include/seqan3/utility/simd/views/iota_simd.hpp
 include/seqan3/utility/simd/views/to_simd.hpp
 include/seqan3/utility/tuple/all.hpp
@@ -653,9 +516,11 @@ include/seqan3/utility/tuple/pod_tuple.hpp
 include/seqan3/utility/tuple/pop_front.hpp
 include/seqan3/utility/tuple/split.hpp
 include/seqan3/utility/type_list/all.hpp
+include/seqan3/utility/type_list/detail/type_list_algorithm.hpp
 include/seqan3/utility/type_list/traits.hpp
 include/seqan3/utility/type_list/type_list.hpp
 include/seqan3/utility/type_pack/all.hpp
+include/seqan3/utility/type_pack/detail/type_pack_algorithm.hpp
 include/seqan3/utility/type_pack/traits.hpp
 include/seqan3/utility/type_traits/all.hpp
 include/seqan3/utility/type_traits/basic.hpp
@@ -663,7 +528,7 @@ include/seqan3/utility/type_traits/concept.hpp
 include/seqan3/utility/type_traits/detail/transformation_trait_or.hpp
 include/seqan3/utility/type_traits/function_traits.hpp
 include/seqan3/utility/type_traits/lazy_conditional.hpp
-include/seqan3/utility/type_traits/pre.hpp
+include/seqan3/utility/views/all.hpp
 include/seqan3/utility/views/chunk.hpp
 include/seqan3/utility/views/convert.hpp
 include/seqan3/utility/views/deep.hpp