diff options
| author | Yuri Victorovich <yuri@FreeBSD.org> | 2023-05-04 07:28:54 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2023-05-04 16:24:49 +0000 |
| commit | f2076251c24f02ff9a2873e79ba9053c875b184e (patch) | |
| tree | d8b33523979371fe87ef21bec969502cde7791a7 | |
| parent | 94d45086f17c4e542ce7757ad31124b56d856003 (diff) | |
science/py-signac: New port: Manage large and heterogeneous data spaces on the file system
| -rw-r--r-- | science/Makefile | 1 | ||||
| -rw-r--r-- | science/py-signac/Makefile | 34 | ||||
| -rw-r--r-- | science/py-signac/distinfo | 3 | ||||
| -rw-r--r-- | science/py-signac/files/patch-pyproject.toml | 11 | ||||
| -rw-r--r-- | science/py-signac/pkg-descr | 7 |
5 files changed, 56 insertions, 0 deletions
diff --git a/science/Makefile b/science/Makefile index b2edac6b6fe5..3aaac77ac1e8 100644 --- a/science/Makefile +++ b/science/Makefile @@ -423,6 +423,7 @@ SUBDIR += py-sdf SUBDIR += py-segregation SUBDIR += py-segyio + SUBDIR += py-signac SUBDIR += py-sklearn-pandas SUBDIR += py-skrebate SUBDIR += py-spaghetti diff --git a/science/py-signac/Makefile b/science/py-signac/Makefile new file mode 100644 index 000000000000..661e8f9a83fd --- /dev/null +++ b/science/py-signac/Makefile @@ -0,0 +1,34 @@ +PORTNAME= signac +DISTVERSIONPREFIX= v +DISTVERSION= 2.0.0 +CATEGORIES= science # physics +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Manage large and heterogeneous data spaces on the file system +WWW= https://signac.io/ + +LICENSE= BSD3CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE.txt + +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}filelock>=3.0:sysutils/py-filelock@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}packaging>=15.0:devel/py-packaging@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}tqdm>=4.10.0:misc/py-tqdm@${PY_FLAVOR} +PY_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} # optional dependency +BUILD_DEPENDS= ${PY_DEPENDS} \ + ${PYTHON_PKGNAMEPREFIX}setuptools>0:devel/py-setuptools@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} +RUN_DEPENDS= ${PY_DEPENDS} +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}zarr>0:devel/py-zarr@${PY_FLAVOR} + +USES= python:3.8+ +USE_PYTHON= pep517 autoplist pytest # some tests fail because of https://github.com/zarr-developers/zarr-python/issues/1407 + +USE_GITHUB= yes +GH_ACCOUNT= glotzerlab + +BINARY_ALIAS= python=${PYTHON_CMD} + +NO_ARCH= yes + +.include <bsd.port.mk> diff --git a/science/py-signac/distinfo b/science/py-signac/distinfo new file mode 100644 index 000000000000..6fd44728c072 --- /dev/null +++ b/science/py-signac/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1683183097 +SHA256 (glotzerlab-signac-v2.0.0_GH0.tar.gz) = d2a0481a9956464d8211e943cc800721abc59d5e7d66ae108132f6eab176fd38 +SIZE (glotzerlab-signac-v2.0.0_GH0.tar.gz) = 450172 diff --git a/science/py-signac/files/patch-pyproject.toml b/science/py-signac/files/patch-pyproject.toml new file mode 100644 index 000000000000..fb01197bcedc --- /dev/null +++ b/science/py-signac/files/patch-pyproject.toml @@ -0,0 +1,11 @@ +--- pyproject.toml.orig 2023-05-04 06:58:21 UTC ++++ pyproject.toml +@@ -3,7 +3,7 @@ + # This software is licensed under the BSD 3-Clause License. + [build-system] + build-backend = "setuptools.build_meta" +-requires = ["setuptools>=64.0.0"] ++requires = ["setuptools>0"] + + [project] + name = "signac" diff --git a/science/py-signac/pkg-descr b/science/py-signac/pkg-descr new file mode 100644 index 000000000000..16d66a6b4020 --- /dev/null +++ b/science/py-signac/pkg-descr @@ -0,0 +1,7 @@ +The signac framework helps users manage and scale file-based workflows, +facilitating data reuse, sharing, and reproducibility. + +It provides a simple and robust data model to create a well-defined indexable +storage layout for data and metadata. This makes it easier to operate on large +data spaces, streamlines post-processing and analysis and makes data +collectively accessible. |