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authorHerve Quiroz <hq@FreeBSD.org>2006-02-13 09:42:13 +0000
committerHerve Quiroz <hq@FreeBSD.org>2006-02-13 09:42:13 +0000
commitcf01181180a2d556149da5bc7dc35e32a337878f (patch)
treeddf0f737b01e47b0bf856a5701bf399f206d0d57 /biology/jalview/files/patch-build.xml
parentccc92aef9b9074ca6f66b1bf985cab7a166b41c4 (diff)
downloadports-cf01181180a2d556149da5bc7dc35e32a337878f.tar.gz
ports-cf01181180a2d556149da5bc7dc35e32a337878f.zip
Jalview is a multiple alignment editor written in Java. It is used widely in a
variety of web pages (e.g. the EBI Clustalw server and the Pfam protein domain database) and is also available as a general purpose alignment editor. WWW: http://www.jalview.org PR: 93054 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar>
Notes
Notes: svn path=/head/; revision=155905
Diffstat (limited to 'biology/jalview/files/patch-build.xml')
-rw-r--r--biology/jalview/files/patch-build.xml52
1 files changed, 52 insertions, 0 deletions
diff --git a/biology/jalview/files/patch-build.xml b/biology/jalview/files/patch-build.xml
new file mode 100644
index 000000000000..d7cd9ab4a814
--- /dev/null
+++ b/biology/jalview/files/patch-build.xml
@@ -0,0 +1,52 @@
+$FreeBSD$
+
+This patch removes the webstart support.
+
+--- build.xml.orig Mon Dec 12 14:57:02 2005
++++ build.xml Fri Jan 27 12:20:52 2006
+@@ -180,6 +180,10 @@
+ </fileset>
+ </copy>
+ <!-- the default keystore details might need to be edited here -->
++<!-- Remove all the remaining stuff for this target
++ which is only necessary if we want to start jalview
++ using java web start. It requires us to generate a key
++ before building the port - Fernan - 27.Jan.2006
+ <signjar
+ storepass="alignmentisfun"
+ keypass="alignmentisfun"
+@@ -194,8 +198,9 @@
+ </fileset>
+ </signjar>
+ <taskdef classpathref="build.classpath" resource="com/roxes/tools/ant/taskdefs.properties"/>
+-
++-->
+ <!-- codebase="http://www.jalview.org/jalview/webstart" -->
++<!--
+ <jnlp toFile="${packageDir}/jalview.jnlp" href="jalview.jnlp"
+ codebase="${WebStartLocation}">
+ <information>
+@@ -206,6 +211,7 @@
+ <description kind="short">Jalview</description>
+ <icon href="logo_big.gif"/>
+ <offline_allowed/>
++-->
+ <!--
+ <association mime-type="application-x/ext-file" extensions="fa"/>
+ <association mime-type="application-x/ext-file" extensions="fasta"/>
+@@ -216,6 +222,7 @@
+ <association mime-type="application-x/ext-file" extensions="aln"/>
+ <association mime-type="application-x/ext-file" extensions="pir"/>
+ -->
++<!--
+ </information>
+ <resources>
+ <j2se version="1.4+"/>
+@@ -234,6 +241,7 @@
+ <all_permissions/>
+ </security>
+ </jnlp>
++-->
+ </target>
+ <target name="runenv" depends="init">
+ <path id="run.classpath">