diff options
Diffstat (limited to 'biology/cufflinks/Makefile')
| -rw-r--r-- | biology/cufflinks/Makefile | 8 |
1 files changed, 7 insertions, 1 deletions
diff --git a/biology/cufflinks/Makefile b/biology/cufflinks/Makefile index 0de2dda73fec..a737f0a40204 100644 --- a/biology/cufflinks/Makefile +++ b/biology/cufflinks/Makefile @@ -1,7 +1,7 @@ PORTNAME= cufflinks DISTVERSIONPREFIX= v DISTVERSION= 2.2.1-89 -PORTREVISION= 2 +PORTREVISION= 8 DISTVERSIONSUFFIX= -gdc3b0cb CATEGORIES= biology @@ -10,6 +10,7 @@ PATCHFILES+= ea4671149f3054c773d99cea521db75bf7b0658f.patch:-p1 # https://github MAINTAINER= yuri@FreeBSD.org COMMENT= Cufflinks assembles transcripts, estimates their abundance, etc +WWW= https://cole-trapnell-lab.github.io/cufflinks/ LICENSE= BSL LICENSE_FILE= ${WRKSRC}/LICENSE @@ -18,14 +19,19 @@ LIB_DEPENDS= libboost_system.so:devel/boost-libs \ libhts.so:biology/htslib USES= autoreconf compiler:c++11-lang eigen:3 gmake python shebangfix + SHEBANG_FILES= src/cuffmerge + GNU_CONFIGURE= yes + USE_GITHUB= yes GH_ACCOUNT= cole-trapnell-lab CXXFLAGS+= -I${LOCALBASE}/include/eigen3 CFLAGS+= -I${LOCALBASE}/include/eigen3 # https://github.com/cole-trapnell-lab/cufflinks/issues/113 +CONFLICTS_INSTALL= gffread + PLIST_FILES= bin/compress_gtf \ bin/cuffcompare \ bin/cuffdiff \ |