diff options
Diffstat (limited to 'biology/ncbi-blast+/Makefile')
| -rw-r--r-- | biology/ncbi-blast+/Makefile | 22 |
1 files changed, 14 insertions, 8 deletions
diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile index 265779243d25..5e3ccea79b43 100644 --- a/biology/ncbi-blast+/Makefile +++ b/biology/ncbi-blast+/Makefile @@ -1,6 +1,6 @@ PORTNAME= ncbi-blast+ -DISTVERSION= 2.12.0 -PORTREVISION= 2 +DISTVERSION= 2.14.1 +PORTREVISION= 3 CATEGORIES= biology perl5 python MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \ https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/ @@ -8,10 +8,14 @@ DISTNAME= ncbi-blast-${PORTVERSION}+-src MAINTAINER= jwb@FreeBSD.org COMMENT= NCBI implementation of Basic Local Alignment Search Tool +WWW= https://blast.ncbi.nlm.nih.gov LICENSE= PD LICENSE_FILE= ${WRKSRC}/scripts/projects/blast/LICENSE +ONLY_FOR_ARCHS= aarch64 amd64 powerpc64 powerpc64le riscv64 +ONLY_FOR_ARCHS_REASON= Requires 64-bit processor + LIB_DEPENDS= libpcre.so:devel/pcre \ liblmdb.so:databases/lmdb \ liblzo2.so:archivers/lzo2 \ @@ -28,11 +32,13 @@ LIB_DEPENDS= libpcre.so:devel/pcre \ libsqlite3.so:databases/sqlite3 \ libuv.so:devel/libuv \ libnghttp2.so:www/libnghttp2 \ - libgrpc.so:devel/grpc + libgrpc.so:devel/grpc \ + libzstd.so:archivers/zstd \ + libdw.so:devel/elfutils RUN_DEPENDS= p5-List-MoreUtils>=0:lang/p5-List-MoreUtils \ p5-JSON>=0:converters/p5-JSON -USES= compiler:c++14-lang gmake localbase:ldflags shebangfix perl5 python:3.6+ +USES= compiler:c++14-lang gmake localbase:ldflags shebangfix perl5 python USE_LDCONFIG= yes SHEBANG_FILES= src/app/blast/legacy_blast.pl \ @@ -52,6 +58,10 @@ CONFLICTS_INSTALL= ncbi-cxx-toolkit WRKSRC_SUBDIR= c++ +.if !exists(/usr/include/omp.h) +CONFIGURE_ARGS+= --without-openmp +.endif + .include <bsd.port.pre.mk> .if ${CHOSEN_COMPILER_TYPE} == gcc @@ -59,10 +69,6 @@ WRKSRC_SUBDIR= c++ LDFLAGS+= -latomic # Only exists in gcc libs .endif -.if ${ARCH} == powerpc -CONFIGURE_ARGS+= --without-openmp -.endif - post-install: @${RM} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/*/*/.cvsignore.extra @${RM} -rf ${STAGEDIR}${PREFIX}/lib/X11 |