diff options
Diffstat (limited to 'biology/py-PySCeS/Makefile')
| -rw-r--r-- | biology/py-PySCeS/Makefile | 37 |
1 files changed, 20 insertions, 17 deletions
diff --git a/biology/py-PySCeS/Makefile b/biology/py-PySCeS/Makefile index 8130f8b00e2f..5ca807f6ded2 100644 --- a/biology/py-PySCeS/Makefile +++ b/biology/py-PySCeS/Makefile @@ -1,37 +1,40 @@ PORTNAME= PySCeS -DISTVERSION= 0.9.8a +DISTVERSION= 1.1.1 CATEGORIES= biology python +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} +DISTNAME= ${PORTNAME:tl}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Python Simulator for Cellular Systems +WWW= https://pysces.sourceforge.net/ -LICENSE= BSD2CLAUSE -LICENSE_FILE= ${WRKSRC}/LICENSE.txt +LICENSE= BSD3CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENCE.txt PY_DEPENDS= ${PYNUMPY} \ - ${PYTHON_PKGNAMEPREFIX}ipython>0:devel/ipython@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}nose>0:devel/py-nose@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}python-libsbml>0:biology/py-python-libsbml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} -BUILD_DEPENDS= ${PY_DEPENDS} -RUN_DEPENDS= ${PY_DEPENDS} +PY_EXTRA= ${PYTHON_PKGNAMEPREFIX}python-libsbml>0:biology/py-python-libsbml@${PY_FLAVOR} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}scikit-build>0:devel/py-scikit-build@${PY_FLAVOR} \ + cmake:devel/cmake-core \ + ${PY_DEPENDS} +RUN_DEPENDS= ${PY_DEPENDS} \ + ${PY_EXTRA} -USES= fortran python -USE_PYTHON= distutils autoplist - -USE_GITHUB= yes -GH_PROJECT= ${PORTNAME:tl} +USES= fortran localbase:ldflags python +USE_PYTHON= distutils autoplist pytest LDFLAGS+= -lpython${PYTHON_VER} -shared # see https://github.com/PySCeS/pysces/issues/29 +TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} + post-install: @${STRIP_CMD} \ - ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pysces/pitcon/pitcon.cpython-38.so \ - ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pysces/nleq2/nleq2.cpython-38.so + ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pysces/pitcon/pitcon.cpython-${PYTHON_SUFFIX}.so \ + ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pysces/nleq2/nleq2.cpython-${PYTHON_SUFFIX}.so -do-test: install # from section 2.1 Loading PySCeS in http://pysces.sourceforge.net/pdf/userguide.pdf - @${PYTHON_CMD} -c "import pysces; pysces.test();" +do-test: # from section 2.1 Loading PySCeS in http://pysces.sourceforge.net/pdf/userguide.pdf + @${SETENV} ${TEST_ENV} ${PYTHON_CMD} -c "import pysces; pysces.test();" .include <bsd.port.mk> |