diff options
Diffstat (limited to 'biology/sam2pairwise/files/patch-Makefile')
| -rw-r--r-- | biology/sam2pairwise/files/patch-Makefile | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/biology/sam2pairwise/files/patch-Makefile b/biology/sam2pairwise/files/patch-Makefile new file mode 100644 index 000000000000..56ed56b8a857 --- /dev/null +++ b/biology/sam2pairwise/files/patch-Makefile @@ -0,0 +1,39 @@ +--- Makefile.orig 2014-08-22 20:02:24 UTC ++++ Makefile +@@ -1,8 +1,19 @@ +-CXX = g++ +-CC = g++ ++CXX ?= g++ ++LD = ${CXX} + +-sam2pairwise: sam2pairwise.o isolate_md.o shift_cigar.o shift_md.o translate_cigar.o translate_md.o ++OBJS = sam2pairwise.o isolate_md.o shift_cigar.o shift_md.o \ ++ translate_cigar.o translate_md.o + ++PREFIX ?= /usr/local ++DESTDIR ?= . ++INSTALL ?= install ++MKDIR ?= mkdir ++ ++all: sam2pairwise ++ ++sam2pairwise: ${OBJS} ++ ${CXX} ${OBJS} -o sam2pairwise ++ + isolate_md.o: isolate_md.cc isolate_md.hh + + shift_cigar.o: shift_cigar.cc shift_cigar.hh +@@ -15,6 +26,11 @@ translate_md.o: translate_md.cc translate_md.hh + + sam2pairwise.o: sam2pairwise.cc isolate_md.hh shift_cigar.hh shift_md.hh translate_cigar.hh translate_md.hh + +-clobber: +- rm -f *.o core sam2pairwise ++.PHONY: install clean + ++install: ++ ${MKDIR} -p ${DESTDIR}${PREFIX}/bin ++ ${INSTALL} -c sam2pairwise ${DESTDIR}${PREFIX}/bin ++ ++clean: ++ rm -f *.o core sam2pairwise |