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* Convert to UCL & cleanup pkg-message (categories a-c)Mathieu Arnold2019-08-1313-32/+78
* biology/bolt-lmm: Upgrade to 2.3.4Jason W. Bacon2019-08-137-120/+63
* biology/checkm: Update 1.0.16 -> 1.0.17Yuri Victorovich2019-08-112-4/+4
* biology/gperiodic: upgrade 2.0.10 -> 3.0.3Kurt Jaeger2019-08-113-23/+39
* Update to 1.007005 (1.7.5)Sunpoet Po-Chuan Hsieh2019-08-113-20/+5
* Update WWWSunpoet Po-Chuan Hsieh2019-08-111-1/+1
* biology/checkm: Update 1.0.13 -> 1.0.16Yuri Victorovich2019-08-092-5/+4
* biology/hhsuite: fix build on powerpc64Piotr Kubaj2019-08-051-2/+7
* PR: 239613Jason W. Bacon2019-08-046-1/+94
* biology/diamond: Update to version 0.9.25Joseph Mingrone2019-08-042-4/+4
* Mark BROKEN: unfetchableAntoine Brodin2019-08-043-0/+6
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2019-07-2650-32/+50
* biology/gatk: Update 4.0.11.0 -> 4.1.2.0-43Yuri Victorovich2019-07-262-12/+31
* - Update WWWDmitry Marakasov2019-07-251-1/+1
* Prepare for devel/gradle4 and java/openjfx8-devel updatesTobias Kortkamp2019-07-231-2/+2
* biology/treekin: fix build on GCC architecturesPiotr Kubaj2019-07-191-1/+2
* ncbi-blast+: Unbreak build with gcc8 following gcc9 patchJason W. Bacon2019-07-122-7/+9
* New port: biology/libbigwig: C library for handling bigWig files (containing ...Yuri Victorovich2019-07-115-0/+54
* ncbi-blast+: Fix build with gcc9Jason W. Bacon2019-07-111-0/+14
* Update security/nettle to 3.5.1Sunpoet Po-Chuan Hsieh2019-07-092-1/+2
* - Update WWWDmitry Marakasov2019-07-081-1/+1
* biology/mothur: Update 1.42.2 -> 1.42.3Yuri Victorovich2019-06-282-4/+4
* Mark this port as not buildable on powerpc64:Mark Linimon2019-06-251-0/+2
* biology/iqtree: Update to version 1.6.11Joseph Mingrone2019-06-242-4/+4
* biology/viennarna: Make it less/not prone to failures due to hardcoded C++ li...Yuri Victorovich2019-06-245-29/+15
* New port: biology/viennarna: Alignment tools for the structural analysis of RNAYuri Victorovich2019-06-249-0/+331
* Use USES=pathfixSunpoet Po-Chuan Hsieh2019-06-221-21/+14
* biology/abyss: fix build on big-endian architecturesPiotr Kubaj2019-06-213-2/+20
* Enable workaround for building on powerpc64.Mark Linimon2019-06-211-2/+8
* biology/mothur: Update 1.42.1-3 -> 1.42.2Yuri Victorovich2019-06-192-6/+5
* biology/py-bx-python: Update 0.8.2 -> 0.8.4Yuri Victorovich2019-06-192-5/+4
* New port: biology/treekin: Efficient computation of RNA folding dynamicsYuri Victorovich2019-06-154-0/+37
* biology/ncbi-blast+: Fix build on powerpc64, add run dep for update_blastdb.plJason W. Bacon2019-06-141-4/+10
* biology/ncbi-blast+: Upgrade to 2.9.0Jason W. Bacon2019-06-123-6/+78
* biology/kallisto: Upgrade to 0.46.0Jason W. Bacon2019-06-122-4/+4
* biology/tRNAscan-SE: Update to 2.0.3Steve Wills2019-06-083-15/+8
* biology/igv: Update 2.5.2 -> 2.5.3Yuri Victorovich2019-06-012-6/+6
* biology/tRNAscan-SE: fix build with GCC-based architectursPiotr Kubaj2019-05-301-1/+3
* biology/cufflinks: Fix build on i386 by removing the hard-coded -m64Yuri Victorovich2019-05-291-0/+16
* biology/bolt-lmm: Mixed model association testing and variance component anal...Jason W. Bacon2019-05-269-0/+228
* New port: biology/cufflinks: Cufflinks assembles transcripts, estimates their...Yuri Victorovich2019-05-256-0/+80
* biology/hhsuite: Fix build on platforms where SIMD instruction set doesn't ex...Yuri Victorovich2019-05-222-0/+36
* biology/fastp: Remove redundant USE_GCCJason W. Bacon2019-05-201-8/+1
* biology/mothur: Add USES=compiler:c++11-langYuri Victorovich2019-05-201-1/+1
* New port: biology/mothur: Software for bioinformatics of the microbial ecolog...Yuri Victorovich2019-05-204-0/+41
* - Update to 3.3.20190321Wen Heping2019-05-202-5/+4
* - Update to 5.18.0Wen Heping2019-05-203-29/+22
* New port: biology/hhsuite: Remote protein homology detection suiteYuri Victorovich2019-05-198-0/+128
* biology/gemma: Lowercase PORTNAME, remove unnecesary USE_GCCJason W. Bacon2019-05-181-9/+3
* biology/gemma: Genome-wide Efficient Mixed Model AssociationJason W. Bacon2019-05-178-0/+431
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