aboutsummaryrefslogtreecommitdiff
path: root/biology
Commit message (Expand)AuthorAgeFilesLines
* biology/p5-transdecoder: Upgrade to 5.4.0Jason W. Bacon2018-10-234-30/+44
* biology/hyphy: Update to version 2.3.14.16Joseph Mingrone2018-10-203-5/+11
* biology/py-loompy: Update 2.0.14 -> 2.0.15Yuri Victorovich2018-10-192-4/+4
* New port: biology/py-gffutils: Work with GFF and GTF files in a flexible data...Yuri Victorovich2018-10-194-0/+36
* New port: biology/py-pyfaidx: Efficient pythonic random access to fasta subse...Yuri Victorovich2018-10-194-0/+38
* New port: biology/py-gtfparse: Parsing tools for GTF (gene transfer format) f...Yuri Victorovich2018-10-194-0/+32
* biology/ngs-sdk: Update 2.9.2 -> 2.9.3Yuri Victorovich2018-10-183-5/+5
* biology/py-orange3-single-cell: Update 0.8.1 -> 0.8.2Yuri Victorovich2018-10-172-4/+4
* biology/iqtree: Update to version 1.6.7.1Joseph Mingrone2018-10-162-4/+4
* biology/py-orange3-single-cell: Update 0.8.0 -> 0.8.1Yuri Victorovich2018-10-142-6/+11
* biology/py-orange3-bioinformatics: Update 3.2.0 -> 3.2.2Yuri Victorovich2018-10-142-4/+4
* Deprecate most glib12 consumersAntoine Brodin2018-10-121-0/+3
* Update devel/tbb to version 2019.1 and bump dependent ports' revisionsGanael LAPLANCHE2018-10-111-1/+1
* Update to 1.73Sunpoet Po-Chuan Hsieh2018-10-102-6/+10
* New port: biology/ncbi-cxx-toolkit: NCBI C++ ToolkitYuri Victorovich2018-10-085-0/+70
* biology/ncbi-toolkit: Update 2012.06.20 -> 2017.01.06Yuri Victorovich2018-10-076-175/+87
* biology/tinker: Update 7.1.3 -> 8.4.4; Move to science/Yuri Victorovich2018-10-0713-1004/+0
* biology/py-biom-format: Update to version 2.1.7Joseph Mingrone2018-10-062-16/+14
* Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, exceptDag-Erling Smørgrav2018-10-0615-30/+30
* Update devel/tbb to version 2019 and bump dependent port's revisionsGanael LAPLANCHE2018-10-041-0/+1
* - Update to 1-14-10Danilo Egea Gondolfo2018-09-284-8/+9
* - Unbreak by adding missing pkg-plistWen Heping2018-09-282-2/+136
* Allow building on powerpc64.Mark Linimon2018-09-271-1/+1
* Update Objective-C LLVM version to 6.0.Brooks Davis2018-09-261-1/+1
* Change 4 ports from net/mpich2 to net/mpichYuri Victorovich2018-09-221-3/+5
* - Update to 1.63Wen Heping2018-09-222-4/+4
* Fix build on gcc-based archs by updating USES.Mark Linimon2018-09-221-1/+1
* Update to 1.5.2Sunpoet Po-Chuan Hsieh2018-09-212-6/+7
* New port: biology/py-loompy: Work with .loom files for single-cell RNA-seq dataYuri Victorovich2018-09-214-0/+44
* biology/py-cutadapt: Upgrade to 1.18Jason W. Bacon2018-09-203-50/+9
* biology/ngs-sdk: Update 2.9.1 -> 2.9.2Yuri Victorovich2018-09-193-5/+5
* Upgrade these ports to USES=compiler:c++11-lang to fix build on gcc-basedMark Linimon2018-09-181-1/+1
* More precisely specify USES=compiler to fix build on gcc-basedMark Linimon2018-09-183-3/+3
* biology/py-pysam: Update 0.15.0 -> 0.15.1Yuri Victorovich2018-09-172-4/+4
* Add DOCS options to ports that should have one.Mathieu Arnold2018-09-103-0/+6
* biology/seaview: Fix build with Clang 6Tobias Kortkamp2018-09-083-0/+65
* Update science/hdf5 to 1.10.2Sunpoet Po-Chuan Hsieh2018-09-051-1/+1
* Update to 1.31.0Jason E. Hale2018-09-0217-181/+201
* biology/stacks: Enable OpenMP (oversight in previous commit)Jason W. Bacon2018-09-011-2/+2
* biology/iqtree: Update to version 1.6.7Joseph Mingrone2018-08-272-5/+4
* biology/py-bx-python: Update 0.8.1 -> 0.8.2Yuri Victorovich2018-08-262-5/+5
* biology/unanimity: Upgrade to latest release, soften dep version requirementsJason W. Bacon2018-08-252-11/+10
* biology/protomol: Fix doubled USES overwriting the old valueTobias Kortkamp2018-08-251-3/+2
* biology/protomol: Fix build with Clang 6Tobias Kortkamp2018-08-251-0/+1
* biology/primer3: Fix build with Clang 6Tobias Kortkamp2018-08-251-0/+24
* biology/libsbml: Fix build with Clang 6Tobias Kortkamp2018-08-251-9/+2
* biology/avida: Fix build with Clang 6Tobias Kortkamp2018-08-251-0/+1
* biology/lamarc: Fix build with Clang 6Tobias Kortkamp2018-08-251-0/+2
* Mark as broken with clang6 after r473289.Mark Linimon2018-08-241-1/+9
* - Update to 1.72Wen Heping2018-08-242-5/+4
generated by cgit v1.2.3 (git 2.25.1) at 2024-04-19 12:07:33 +0000