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* Move Objective-C ports to the v2 GNUstep ABI.David Chisnall2019-02-031-1/+1
* biology/py-loompy: Update 2.0.16 -> 2.0.17Yuri Victorovich2019-02-022-5/+5
* New port: biology/dsr-pdb: Simple C++ PDB reader (reads the protein descripti...Yuri Victorovich2019-01-299-0/+122
* biology/py-pysam: Update 0.15.1 -> 0.15.2Yuri Victorovich2019-01-262-4/+4
* Sort categories Makefiles.Mathieu Arnold2019-01-221-1/+1
* Fix Qt5 symbol version scripts to put the catch-all clause first. WhenTijl Coosemans2019-01-163-2/+3
* biology/stacks: Upgrade to 2.3Jason W. Bacon2019-01-124-38/+14
* New port: biology/hisat2: Program for mapping next-generation sequencing readsJason W. Bacon2019-01-117-0/+577
* Fixup bulk -a errors with BUILD_ALL_PYTHON_FLAVORS=yes.Mathieu Arnold2019-01-111-1/+2
* biology/seqtools: fix build on current, if lld is lld7Kurt Jaeger2019-01-071-0/+1
* biology/groopm fails to build with python3Antoine Brodin2019-01-071-1/+1
* Update dns/libidn2 to 2.1.0Sunpoet Po-Chuan Hsieh2019-01-062-0/+2
* Update science/hdf5 to 1.10.4Sunpoet Po-Chuan Hsieh2019-01-051-1/+1
* biology/ncbi-blast+: Upgrade to 2.8.1Jason W. Bacon2019-01-014-32/+244
* biology/diamond: Update to version 0.9.24Joseph Mingrone2018-12-314-27/+12
* biology/iqtree: switch to outsource cmake buildJoseph Mingrone2018-12-271-2/+2
* Update math/eigen3 to 3.3.7Tobias C. Berner2018-12-261-0/+1
* Change cmake default behaviour to outsource.Tobias C. Berner2018-12-258-8/+8
* biology/iqtree: Update to version 1.6.9Joseph Mingrone2018-12-232-5/+4
* - Update to 1.73Wen Heping2018-12-222-5/+4
* Remove expired ports:Rene Ladan2018-12-214-57/+0
* biology/gff2ps: update 0.98d to 0.98lVinícius Zavam2018-12-192-5/+5
* biology/diamond: Update to 0.9.23 plus fixes after releaseJoseph Mingrone2018-12-173-10/+11
* Update Qt5 to 5.12.0Tobias C. Berner2018-12-161-0/+11
* New port: biology/py-fastTSNE: Fast, parallel implementations of t-SNEYuri Victorovich2018-12-155-0/+47
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2018-12-1237-20/+37
* devel/boost-*: update to 1.69.0Jan Beich2018-12-125-3/+5
* Remove biology/njplotJoseph Mingrone2018-12-115-111/+0
* biology/mummer: Add USES=compiler:c++11-langYuri Victorovich2018-12-111-1/+1
* biology/mummer: Update 3.23 -> 4.0.0beta2-2Yuri Victorovich2018-12-113-47/+61
* biology/mummer: Take maintainershipYuri Victorovich2018-12-111-1/+1
* New port: math/checkm: Quality assessment tool for the microbial genomesYuri Victorovich2018-12-074-0/+43
* New port: math/groopm: Metagenomic binning suiteYuri Victorovich2018-12-074-0/+35
* devel/gradle: Update to 5.0Yuri Victorovich2018-12-042-4/+4
* biology/gatk: Change gradle4->gradle because it builds fine with both gradle ...Yuri Victorovich2018-12-031-2/+2
* biology/gatk: Correct the targetYuri Victorovich2018-12-031-1/+1
* New port: biology/gatk: Variant discovery in high-throughput sequencing dataYuri Victorovich2018-12-036-0/+118
* Mark QT4 ports/functionality for removal on 2019-03-15Rene Ladan2018-12-021-0/+3
* biology/igv: Update 2.4.15 -> 2.4.16Yuri Victorovich2018-11-182-6/+6
* biology/molden: update to 5.8.2Johannes M Dieterich2018-11-133-10/+45
* biology/seqan-apps: fix build with GCC-based architecturesSteve Wills2018-11-091-2/+4
* biology/molden: Unbreak: fix the problem that it can't find libgcc_s.so from gccYuri Victorovich2018-11-071-1/+2
* Fix build failure with base GCC because of double typedefs.Mark Linimon2018-11-051-0/+48
* Remove the incorrect typedefs to fix build on tier-2.Mark Linimon2018-11-052-0/+29
* Remove the inccorrect typedefs to fix build on tier-2.Mark Linimon2018-11-051-4/+0
* biology/igv: Update 2.4.10 -> 2.4.15Yuri Victorovich2018-11-043-24/+21
* biology/canu: Upgrade to 1.8, add experimental SLURM integrationJason W. Bacon2018-11-045-31/+102
* biology/bowtie: Patch for gcc8 and clean upJason W. Bacon2018-11-032-6/+17
* biology/bowtie: Revert previous commit with missing log messageJason W. Bacon2018-11-032-17/+5
* biology/bowtie: PatchJason W. Bacon2018-11-032-5/+17
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