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* biology/hisat2: Add support for powerpc64* and aarch64Jason W. Bacon2021-11-285-4/+70
* biology/hisat2: Remove patch causing quality scores of "-0"Jason W. Bacon2021-11-272-11/+1
* biology/hisat2: Update to 2.2.1Jason W. Bacon2021-11-266-480/+99
* biology/star: Update to 2.7.9aJason W. Bacon2021-11-268-35/+162
* */*: Remove redundant '-*' from CONFLICTS definitionsStefan Eßer2021-11-251-1/+1
* biology/rubygem-bio-shell: Update to 1.0.1Po-Chuan Hsieh2021-11-212-4/+4
* biology/cd-hit: fix build on armv7Piotr Kubaj2021-11-211-1/+1
* biology/py-resdk: Update 13.6.0 -> 13.7.0Yuri Victorovich2021-11-182-4/+4
* biology/hyphy: Update to 2.5.33Joseph Mingrone2021-11-172-4/+4
* biology/seqkit: Update 2.0.1 -> 2.1.0Yuri Victorovich2021-11-162-6/+6
* biology/hhsuite: fix packaging on powerpcPiotr Kubaj2021-11-162-4/+10
* biology/seqan3: Update 3.0.3 -> 3.1.0Yuri Victorovich2021-11-153-169/+36
* biology/hyphy: enable on armv7Piotr Kubaj2021-11-121-1/+1
* biology/diamond: Update to 2.0.13Joseph Mingrone2021-11-112-4/+4
* biostar-tools: Add gffread to metaport depsJason W. Bacon2021-11-102-3/+4
* biology/gffread: GFF/GTF format conversions, filtering, FASTA extraction, etcJason W. Bacon2021-11-107-0/+626
* biology/hyphy: enable on powerpc64lePiotr Kubaj2021-11-081-1/+1
* biology/hyphy: enable on powerpc and powerpc64Piotr Kubaj2021-11-071-1/+1
* devel/jsoncpp: Update to 1.9.4 -> 1.9.5Daniel Engberg2021-11-051-0/+1
* biology/freebayes: builds fine on armv7Piotr Kubaj2021-11-051-1/+0
* biology/vcflib: Update to 1.0.2Jason W. Bacon2021-11-047-395/+160
* biology/freebayes: Update to 1.3.5Jason W. Bacon2021-11-0313-271/+53
* biology/py-python-libsbml: limit supported python versions, fix buildDmitry Marakasov2021-11-031-2/+2
* biology/py-libnuml: fix install with python 3.10+Dmitry Marakasov2021-11-021-0/+9
* biology/py-libsedml: fix install with python 3.10+Dmitry Marakasov2021-11-021-1/+10
* biology/libsbml: Fix build with Python 3.10Po-Chuan Hsieh2021-11-012-1/+280
* biology/libsbml: limit supported python versionsDmitry Marakasov2021-11-011-1/+1
* biology/py-pysam: limit supported python versionsDmitry Marakasov2021-11-011-1/+1
* biology/biostar-tools: Add biology/igv to metaport depsJason W. Bacon2021-10-302-3/+4
* */*: Remove redundant '-[0-9]*' from CONFLICTSStefan Eßer2021-10-292-2/+2
* devel/grpc: Update to 1.41.0Po-Chuan Hsieh2021-10-251-0/+1
* */Makefile: Sort SUBDIRsPo-Chuan Hsieh2021-10-251-1/+1
* Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)Alexey Dokuchaev2021-10-256-12/+12
* biology/py-resdk: Update 13.4.0 -> 13.6.0takefu2021-10-222-4/+4
* biology/mafft: Update to 7.267Wen Heping2021-10-222-3/+4
* biology/bamutil: Update to 1.0.15Jason W. Bacon2021-10-202-6/+6
* biology/fastp: Update to 0.23.1Jason W. Bacon2021-10-204-21/+56
* *: fix tab vs. space issues, and comments according to the guide.Jimmy Olgeni2021-10-162-2/+2
* biology/treekin: UnbreakYuri Victorovich2021-10-151-0/+22
* biology/biostar-tools: Add py-deeptools to metaport depsJason W. Bacon2021-10-142-3/+4
* biology/py-deeptools: User-friendly tools for exploring deep-sequencing dataJason W. Bacon2021-10-144-0/+39
* biology/ugene: update UniPro UGENE to version 40.1 (bugfix release).Alexey Dokuchaev2021-10-142-4/+4
* biology/py-crossmap: chase ad5a0604c41cJan Beich2021-10-141-1/+1
* biology/py-bigwig: Rename to biology/py-pybigwigJason W. Bacon2021-10-134-1/+1
* biology/py-pybigwig: remove, duplicate of biology/py-bigwigAntoine Brodin2021-10-135-42/+0
* biology/py-deeptoolsintervals: Python interface for deepTools interval treesJason W. Bacon2021-10-134-0/+34
* biology/py-py-pybigwig: Patch out setup.py warningJason W. Bacon2021-10-131-0/+11
* biology/py-pybigwig: Fix poudriere buildJason W. Bacon2021-10-132-1/+3
* biology/py-pybigwig: Python access to bigWig files using libBigWigJason W. Bacon2021-10-134-0/+30
* biology/py-py2bit: Python interface for 2bit packed nucleotide filesJason W. Bacon2021-10-134-0/+25
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