aboutsummaryrefslogtreecommitdiff
path: root/biology
Commit message (Expand)AuthorAgeFilesLines
* biology/pear-merger: Memory-efficient and accurate paired-end read mergerJason W. Bacon2018-04-044-0/+37
* biology/seqtk: Tool for processing sequences in FASTA/FASTQ formatJason W. Bacon2018-04-035-0/+51
* biology/trimadap: Trim adapter sequences from Illumina dataJason W. Bacon2018-04-036-0/+65
* biology/rainbow: Efficient clustering and assembling of short readsJason W. Bacon2018-04-025-0/+50
* - Update to 1.61Wen Heping2018-04-012-6/+7
* biology/stacks: Software pipeline for building loci from short-read sequencesJason W. Bacon2018-03-317-0/+136
* biology/libgtextutils: Unbreak for FreeBSD 12Jason W. Bacon2018-03-292-1/+12
* biology/bamtools: API and toolkit for handling BAM filesJason W. Bacon2018-03-287-0/+76
* biology/ncbi-blast+: Upgrade to 2.7.1Jason W. Bacon2018-03-276-377/+409
* biology/iqtree: Update to version 1.6.3Joseph Mingrone2018-03-232-5/+4
* biology/py-pysam: Update to 0.14.1Yuri Victorovich2018-03-212-5/+5
* Mark broken on armvX and mips.Mark Linimon2018-03-181-0/+4
* Mark the latest version broken on armvX. Note: 2.1.8.3 built ok.Mark Linimon2018-03-181-0/+3
* biology/diamond: Update to version 0.9.19Joseph Mingrone2018-03-172-5/+4
* biology/diamond: Update to version 0.9.18-49Joseph Mingrone2018-03-152-4/+5
* Return maho@'s ports to the pool after his commit bit expired.Rene Ladan2018-03-111-1/+1
* Remove now-useless, commented-out lines.Mark Linimon2018-03-101-4/+0
* Bump PORTREVISIONs of all users of math/mpc that we just updated toGerald Pfeifer2018-03-1021-15/+21
* biology/seqan-apps, biology/seqan: Update to 2.4.0Yuri Victorovich2018-03-107-1269/+90
* biology/iqtree: Update to version 1.6.2Joseph Mingrone2018-03-032-5/+4
* Reduce dependency on the python2 metaportAntoine Brodin2018-02-191-1/+2
* biology/py-pysam: Update to 0.14Yuri Victorovich2018-02-102-4/+4
* biology/py-bx-python: Update to 0.8.1Yuri Victorovich2018-02-102-8/+9
* Canonicalize PyPi WWWs:Dmitry Marakasov2018-02-081-1/+1
* biology/diamond: Update to version 0.9.17Joseph Mingrone2018-02-012-4/+4
* - Update to 3.3.20180129Wen Heping2018-02-012-5/+4
* Multiple ports:Jason W. Bacon2018-01-3116-29/+16
* devel/boost-*: update to 1.66.0Jan Beich2018-01-182-1/+2
* - Convert to option helper install target (add OPTIONS_DEFINE=DOCSAlexey Dokuchaev2018-01-111-2/+4
* Update Qt5 ports to 5.9.3.Raphael Kubo da Costa2018-01-061-0/+10
* biology/seaview: Update version 4.6.2=>4.6.3Muhammad Moinur Rahman2018-01-053-7/+8
* New USES=eigenTobias C. Berner2018-01-021-5/+2
* - Update to 3.697Wen Heping2018-01-012-3/+4
* - Update to 5.16.0Wen Heping2018-01-013-4/+9
* biology/iqtree: Fix distinfo after upstream re-released v1.6.1Joseph Mingrone2017-12-292-3/+4
* biology/iqtree: Update to version 1.6.1Joseph Mingrone2017-12-282-9/+8
* Disable the extra flag "-march=native" on arm to fix builds.Mark Linimon2017-12-271-3/+6
* Update to 2.0.1Sunpoet Po-Chuan Hsieh2017-12-263-5/+31
* biology/canu: Replace += with = for dependsJason W. Bacon2017-12-221-2/+2
* - Fix build on 11+Dmitry Marakasov2017-12-222-4/+11
* [new port] biology/canu: Single molecule sequence assemblerJason W. Bacon2017-12-226-0/+167
* Try to bring some consistency to ports that have x86-specific pieces.Mark Linimon2017-12-212-12/+12
* Switch from swig 2.0 to swig 3.0Baptiste Daroussin2017-12-201-2/+4
* Mark more recently failing ports broken on aarch64.Mark Linimon2017-12-191-2/+3
* Back out previous commits by jbeich demand.Mark Linimon2017-12-182-10/+2
* Bah. Remove spare line from cut-and-paste.Mark Linimon2017-12-181-1/+0
* Attempt to fix build on non-x86 archs. Untested, but does no harmMark Linimon2017-12-182-2/+11
* biology/diamond: Update to version 0.9.14Joseph Mingrone2017-12-132-4/+4
* biology/seqtools: re-try on powerpc* after r449590Jan Beich2017-12-121-2/+0
* - Those ports fail to build with python3Antoine Brodin2017-12-111-1/+1
generated by cgit v1.2.3 (git 2.25.1) at 2024-04-16 18:15:46 +0000