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* biology/bio-mocha: Update to 1.14-20220112Jason W. Bacon2022-01-135-507/+8
* biology/diamond: Update to 2.0.14Joseph Mingrone2022-01-132-4/+4
* math/gsl: bump portrevision of consumers after update to 2.7.1Tobias C. Berner2022-01-123-2/+3
* biology/rubygem-bio: Update to 2.0.3Po-Chuan Hsieh2022-01-112-4/+4
* textproc/py-sphinx: Update to 4.3.1Danilo G. Baio2022-01-111-0/+10
* Fix CONFLICTS entries of multiple portsStefan Eßer2022-01-1012-0/+24
* biology/vsearch: Update to 2.19.0Jason W. Bacon2022-01-084-38/+7
* biology/molden: update to 6.7Johannes M Dieterich2022-01-056-890/+48
* biology/phyml: update to 3.3.20211231Fernando Apesteguía2022-01-027-87/+12
* biology/minimap2: Update to 2.24Jason W. Bacon2021-12-312-5/+4
* biology/fastp: Update to 0.23.2Jason W. Bacon2021-12-302-4/+4
* biology/py-resdk: Update 13.7.0 -> 13.8.0Yuri Victorovich2021-12-302-4/+4
* devel/grpc: Update to 1.42.0Po-Chuan Hsieh2021-12-211-1/+1
* bio-mocha: Build plugin against bcftools 1.14, the current portJason W. Bacon2021-12-212-5/+7
* biology/py-bx-python: Update 0.8.11-6 -> 0.8.13Yuri Victorovich2021-12-212-10/+5
* biology/canu: fix CATEGORIESAntoine Brodin2021-12-201-1/+1
* biology/py-pysam: Update 0.16.0.1 -> 0.18.0Wen Heping2021-12-202-4/+4
* biology/canu: Update to 2.2Jason W. Bacon2021-12-1911-13/+204
* biology/seqtk: Update to 1.3Jason W. Bacon2021-12-183-17/+29
* biology/bcftools: Update to 1.14Jason W. Bacon2021-12-182-4/+4
* biology/samtools: Update to 1.14Jason W. Bacon2021-12-183-4/+5
* biology/htslib: Update to 1.14Jason W. Bacon2021-12-182-4/+4
* biology/freebayes: enable on riscv64Piotr Kubaj2021-12-171-1/+0
* biology/vcflib: unbreak on riscv64Piotr Kubaj2021-12-161-3/+0
* biology/hisat2: enable on riscv64Piotr Kubaj2021-12-161-1/+1
* biology/bowtie: enable on riscv64Piotr Kubaj2021-12-151-2/+2
* biology/vcf2hap: Update to 0.1.4Jason W. Bacon2021-12-142-5/+5
* biology/vcf-split: Update to 0.1.3.3Jason W. Bacon2021-12-142-5/+6
* biology/peak-classifier: Update to 0.1.2Jason W. Bacon2021-12-142-5/+4
* biology/biolibc-tools: Update to 0.1.1Jason W. Bacon2021-12-143-12/+25
* biology/ad2vcf: Update to 0.1.4Jason W. Bacon2021-12-142-5/+5
* biology/biolibc: Update to 0.2.1Jason W. Bacon2021-12-143-183/+8
* biology/bowtie: Update to 1.3.1Jason W. Bacon2021-12-146-80/+34
* devel/automake: update to 1.16.5Tijl Coosemans2021-12-122-2/+29
* biology/seaview: Update version 5.0.4=>5.0.5Muhammad Moinur Rahman2021-12-063-77/+4
* biology/libgff: GFF/GTF parsing library based on GCLibJason W. Bacon2021-12-055-0/+45
* biology/minimap2: Unbreak on i386 by resotring -msse flagsJason W. Bacon2021-12-032-18/+3
* biology/bio-mocha: bcftools plugin for mosaic chromosomal alterationsJason W. Bacon2021-12-039-0/+613
* biology/taxonkit: Update 0.8.0 -> 0.9.0Yuri Victorovich2021-12-022-6/+6
* biology/bwa: don't use GCC on powerpc64lePiotr Kubaj2021-12-011-3/+0
* biology/biostar-tools: Allow package build on non-amd64 systemsJason W. Bacon2021-12-012-4/+10
* biology/bwa: Unbreak on most non-x86 platforms using simdeJason W. Bacon2021-12-012-7/+17
* biology/minimap2: Update to 2.23Jason W. Bacon2021-11-305-71/+103
* biology/hisat2: Add support for powerpc64* and aarch64Jason W. Bacon2021-11-285-4/+70
* biology/hisat2: Remove patch causing quality scores of "-0"Jason W. Bacon2021-11-272-11/+1
* biology/hisat2: Update to 2.2.1Jason W. Bacon2021-11-266-480/+99
* biology/star: Update to 2.7.9aJason W. Bacon2021-11-268-35/+162
* */*: Remove redundant '-*' from CONFLICTS definitionsStefan Eßer2021-11-251-1/+1
* biology/rubygem-bio-shell: Update to 1.0.1Po-Chuan Hsieh2021-11-212-4/+4
* biology/cd-hit: fix build on armv7Piotr Kubaj2021-11-211-1/+1
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