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* PyQt5: Update PyQt5 to 5.15.4 and py-qtbuilder to 1.9.1Loïc Bartoletti2021-03-161-1/+1
* biology/generand: Generate random genomic data in FAST[AQ], SAM, or VCF formatJason W. Bacon2021-03-154-0/+27
* biology/abyss: Add PORTSCOUT lineYuri Victorovich2021-03-141-0/+2
* Move: biology/py-fastTSNE -> math/py-openTSNEYuri Victorovich2021-03-135-49/+0
* biology/gatk: Fix fetchYuri Victorovich2021-03-131-5/+5
* biology/gatk: Update 4.1.9.0 -> 4.2.0.0Yuri Victorovich2021-03-122-7/+6
* biology/diamond: Update to 2.0.8Joseph Mingrone2021-03-112-4/+4
* biology/hmmer: disable on powerpc64le and powerpcspePiotr Kubaj2021-03-101-1/+1
* biology/py-scikit-bio: fix build on powerpc64Piotr Kubaj2021-03-091-1/+1
* biology/py-scikit-bio: fix build on powerpc64lePiotr Kubaj2021-03-091-2/+5
* PyQt5: Update PyQt5 to 5.15.3, QScintilla2 to 2.12.0, py-qtbuilder to 1.9.0Loïc Bartoletti2021-03-081-1/+1
* Unbreak INDEXAntoine Brodin2021-03-061-1/+1
* py-cutadapt: Update to 3.3Jason W. Bacon2021-03-062-5/+5
* biology/libbigwig: Update 0.4.4 -> 0.4.6Yuri Victorovich2021-03-063-7/+17
* biology/spoa: fix build on non-x86Piotr Kubaj2021-03-041-1/+7
* biology/bwa: fix build on powerpc64lePiotr Kubaj2021-03-021-2/+5
* biology/py-bx-python: Update 0.8.9 -> 0.8.10Yuri Victorovich2021-02-272-9/+6
* biology/hyphy: Update to 2.5.29Joseph Mingrone2021-02-252-4/+4
* biology/hyphy: Update to 2.5.28Joseph Mingrone2021-02-233-4/+5
* Introduce devel/onetbb and mark devel/tbb as legacyGanael LAPLANCHE2021-02-191-2/+2
* biology/spoa: Fix build after recent devel/cereal update; Fix LIB_DEPENDSYuri Victorovich2021-02-192-4/+16
* Mark BROKEN in 13/14 (via latest llvm update).Mark Linimon2021-02-171-0/+3
* biology/diamond: Update to 2.0.7Joseph Mingrone2021-02-172-4/+4
* Update a few GNUstep ports:Neel Chauhan2021-02-141-1/+1
* biology/py-multiqc: Update to 1.9Jason W. Bacon2021-02-052-6/+7
* biology/fastqc: Update to 0.11.9Jason W. Bacon2021-02-042-4/+4
* biology/bioparser: Update 3.0.12 -> 3.0.12-2Yuri Victorovich2021-02-033-17/+17
* biology/py-cutadapt: Update to 3.2Jason W. Bacon2021-02-024-12/+12
* biology/bowtie2: Reverse switch to devel/onetbbJason W. Bacon2021-01-301-2/+2
* biology/bowtie2: Switch to devel/onetbbJason W. Bacon2021-01-301-1/+2
* biology/vsearch: Update to 2.15.2Jason W. Bacon2021-01-303-10/+11
* Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+Sunpoet Po-Chuan Hsieh2021-01-305-5/+5
* biology/hyphy: Update to version 2.5.27Joseph Mingrone2021-01-272-4/+4
* biology/kallisto: Add -lz for pending hdf5 upgradeJason W. Bacon2021-01-261-1/+2
* biology/bedtools: Upgrade to 2.30.0Jason W. Bacon2021-01-246-34/+46
* biology/haplohseq: Fix example scripts for python 3Jason W. Bacon2021-01-236-43/+81
* biology/bedtools: License changed upstreamJason W. Bacon2021-01-221-1/+1
* biology/gatk: Add the WITH_LARGE_FILES option.Yuri Victorovich2021-01-221-0/+30
* biology/gatk: Update 4.1.8.1 -> 4.1.9.0Yuri Victorovich2021-01-212-6/+6
* Fix build on GCC-based systems by adding compiler:c++14-lang to USES:Mark Linimon2021-01-201-1/+1
* Add compiler:c++11-lang to USES to fix build on GCC-based systems:Mark Linimon2021-01-201-1/+1
* biology/bioparser: Cosmetic changesYuri Victorovich2021-01-191-9/+9
* New port: biology/rampler: Standalone module for sampling genomic sequencesYuri Victorovich2021-01-195-0/+66
* New port: biology/edlib: Fast C++ library for sequence alignment using edit d...Yuri Victorovich2021-01-195-0/+40
* New port: biology/spoa: C++ implementation of the partial order alignment (PO...Yuri Victorovich2021-01-196-0/+166
* New port: biology/biosoup: Collection of C++ header-only data structures for ...Yuri Victorovich2021-01-194-0/+46
* New port: biology/bioparser: C++ header only parsing library for several form...Yuri Victorovich2021-01-194-0/+49
* Mark BROKEN on riscv64 the same as on aarch64.Mark Linimon2021-01-191-2/+3
* Mark BROKEN on riscv64 the same as armv*:Mark Linimon2021-01-191-0/+1
* biology/vsearch: enable on powerpc64lePiotr Kubaj2021-01-161-1/+1
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