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* biology/iqtree: Update to version 1.6.7Joseph Mingrone2018-08-272-5/+4
* biology/py-bx-python: Update 0.8.1 -> 0.8.2Yuri Victorovich2018-08-262-5/+5
* biology/unanimity: Upgrade to latest release, soften dep version requirementsJason W. Bacon2018-08-252-11/+10
* biology/protomol: Fix doubled USES overwriting the old valueTobias Kortkamp2018-08-251-3/+2
* biology/protomol: Fix build with Clang 6Tobias Kortkamp2018-08-251-0/+1
* biology/primer3: Fix build with Clang 6Tobias Kortkamp2018-08-251-0/+24
* biology/libsbml: Fix build with Clang 6Tobias Kortkamp2018-08-251-9/+2
* biology/avida: Fix build with Clang 6Tobias Kortkamp2018-08-251-0/+1
* biology/lamarc: Fix build with Clang 6Tobias Kortkamp2018-08-251-0/+2
* Mark as broken with clang6 after r473289.Mark Linimon2018-08-241-1/+9
* - Update to 1.72Wen Heping2018-08-242-5/+4
* Remove expired ports:Rene Ladan2018-08-166-104/+0
* biology/cytoscape: Fix licenseYuri Victorovich2018-08-122-3/+5
* Mark as broken on arm.Mark Linimon2018-08-121-0/+4
* devel/boost-*: update to 1.68.0Jan Beich2018-08-095-2/+5
* biology/py-orange3-bioinformatics: Update 3.1.1 -> 3.2.0Yuri Victorovich2018-08-092-4/+4
* biology/py-orange3-single-cell: Update 0.7.0 -> 0.8.0Yuri Victorovich2018-08-082-4/+4
* Regular sorting of categories Makefiles.Mathieu Arnold2018-08-081-1/+1
* New port: biology/py-orange3-single-cell: Orange add-on for gene expression o...Yuri Victorovich2018-08-074-0/+43
* biology/vcftools: Update to 0.1.16, a security releaseJason W. Bacon2018-08-042-4/+4
* biology/bcftools: update to 1.9Fernando Apesteguía2018-08-025-24/+41
* biology/samtools: update to 1.9Fernando Apesteguía2018-08-022-8/+7
* biology/htslib: update to 1.9Fernando Apesteguía2018-08-022-6/+8
* biology/py-pysam: Update 0.14.1 -> 0.15.0Yuri Victorovich2018-07-303-8/+5
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2018-07-2915-10/+15
* biology/linux-foldingathome: reset maintainer by requestEitan Adler2018-07-271-1/+1
* biology/seaview: Updatye version 4.6.5=>4.7Muhammad Moinur Rahman2018-07-222-4/+4
* biology/molden: Unbreak by updating the MASTER_SITES URLYuri Victorovich2018-07-201-2/+1
* Mark BROKEN: unfetchaableAntoine Brodin2018-07-201-0/+1
* biology/htslib: Update 1.6 -> 1.8Yuri Victorovich2018-07-164-10/+8
* Deprecate unmaintained ports under the NONE licenseAntoine Brodin2018-07-131-0/+3
* biology/molden: Unbreak by updating the MASTER_SITES URLYuri Victorovich2018-07-131-2/+1
* Mark BROKEN: unfetchableAntoine Brodin2018-07-131-0/+1
* New port: biology/exonerate: Generic tool for sequence alignmentYuri Victorovich2018-07-135-0/+67
* biology/py-orange3-bioinformatics: Update 3.1.0 -> 3.1.1Yuri Victorovich2018-07-122-4/+4
* New port: biology/stringtie: Transcript assembly and quantification for RNA-seqYuri Victorovich2018-07-118-0/+157
* biology/hmmer: update to 3.2.1Steve Wills2018-07-114-46/+23
* biology/iqtree: Update to version 1.6.6Joseph Mingrone2018-07-082-4/+4
* New port: biology/cytoscape: Software to visualize molecular interaction netw...Yuri Victorovich2018-07-034-0/+83
* Mark various ports broken on mips64 and, where appropriate, mips.Mark Linimon2018-07-021-2/+4
* Mark BROKEN: missing plistAntoine Brodin2018-06-291-0/+3
* Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mkTobias C. Berner2018-06-282-4/+4
* New port: biology/igv: Visualization tool for genomic datasetsYuri Victorovich2018-06-256-0/+77
* Mark as broken on aarch64.Mark Linimon2018-06-251-0/+2
* - Update to 5.17.0Wen Heping2018-06-253-4/+5
* biology/phyml: update to v3.3.20180621Fernando Apesteguía2018-06-232-5/+6
* Update math/gsl to 2.5Tobias C. Berner2018-06-231-0/+1
* biology/ngs-sdk: Update 2.9.0 -> 2.9.1Yuri Victorovich2018-06-223-5/+5
* Mark these ports as broken on aarch64.Mark Linimon2018-06-222-0/+4
* Mark as broken on aarch64, and, where appropriate, armvX.Mark Linimon2018-06-214-0/+16
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