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* biology/gmap: enable on powerpc64lePiotr Kubaj2020-10-091-1/+1
* Update PyQt to 5.15.0, py-sip to 4.19.24 and qscintilla2 to 2.11.5Loïc Bartoletti2020-10-051-0/+1
* Convert REINPLACE_CMD to patch fileSunpoet Po-Chuan Hsieh2020-09-292-1/+22
* Update PYTHON option to use Python 3Sunpoet Po-Chuan Hsieh2020-09-271-5/+2
* Allow building on powerpc64le.Mark Linimon2020-09-271-1/+1
* Canonicalize powerpc64le CXXFLAGS to be the same as powerpc64.Mark Linimon2020-09-271-0/+1
* biology/abyss: Update 2.2.4 -> 2.2.5Yuri Victorovich2020-09-273-6/+5
* biology/ncbi-cxx-toolkit: Fix build on 13Yuri Victorovich2020-09-271-0/+10
* biology/py-biom-format: Fix fetch and relax scipy requirementJoseph Mingrone2020-09-262-4/+5
* biology/ncbi-cxx-toolkit: Update 21.0.0 -> 22.0.0Yuri Victorovich2020-09-253-10/+17
* biology/py-biom-format: Update to version 2.1.8Joseph Mingrone2020-09-252-15/+7
* biology/py-scikit-bio: Fix build on the i386 architectureYuri Victorovich2020-09-241-1/+8
* Also enable on powerpc64le.Mark Linimon2020-09-241-1/+1
* Also enable on powerpc64le.Mark Linimon2020-09-241-1/+1
* biology/py-biom-format: Restore in preparation for an update to v2.1.8Joseph Mingrone2020-09-244-0/+65
* biology/gmap: Upgrade to 2020.09.12Jason W. Bacon2020-09-223-27/+17
* Fix build with -fno-commonStefan Eßer2020-09-213-1/+23
* Unbreak bulk -aAntoine Brodin2020-09-191-1/+1
* Remove expired ports:Rene Ladan2020-09-1922-506/+0
* biology/subread: Add -fcommon for clang 11Jason W. Bacon2020-09-181-0/+1
* biology/canu: Upgrade to 2.1Jason W. Bacon2020-09-144-40/+24
* biology/py-pyfaidx: Update 0.5.5.2 -> 0.5.9.1Yuri Victorovich2020-09-132-5/+4
* biology/gatk: Fix buildYuri Victorovich2020-09-081-3/+3
* biology/viennarna: Update 2.4.14 -> 2.4.15Yuri Victorovich2020-09-072-5/+4
* biology/gatk: Update 4.1.8.0 -> 4.1.8.1Yuri Victorovich2020-09-062-6/+6
* biology/mapm3: Reformat patches.Fernando Apesteguía2020-09-0423-125/+128
* biology/mapm3: Fix build with llvm11, gcc10Fernando Apesteguía2020-09-041-4/+14
* biology/hyphy: Update to version 2.5.18 and add AVX optionJoseph Mingrone2020-09-023-6/+29
* biology/py-ete3: Update 3.1.1 -> 3.1.2Yuri Victorovich2020-09-022-4/+4
* biology/diamond: Update to version 2.0.4Joseph Mingrone2020-08-303-49/+4
* biology/picard-tools: Remove extraneous fileJason W. Bacon2020-08-301-112/+0
* Extend expiration of ports broken with -fno-commonNiclas Zeising2020-08-303-7/+9
* Chase security/p11-kit updateRoman Bogorodskiy2020-08-302-2/+2
* biology/: Fix build with clang11 and deprecate ports@ portsTobias C. Berner2020-08-293-0/+15
* biology/phyml: fix build on recent currentTobias C. Berner2020-08-294-0/+74
* biology/cufflinks: fix build on recent currentTobias C. Berner2020-08-281-0/+11
* biology/bwa: fix build on recent currentTobias C. Berner2020-08-282-1/+6
* Remove expired ports:Rene Ladan2020-08-276-129/+0
* biology/hhsuite: Update 3.2.0 -> 3.3.0Yuri Victorovich2020-08-274-46/+4
* biology/paml: fix the build with LLVM 11Kyle Evans2020-08-201-0/+14
* biology/hyphy: Update to version 2.5.17Joseph Mingrone2020-08-202-4/+4
* devel/ipython: Update to 7.17.0Danilo G. Baio2020-08-151-1/+1
* Remove deprecated ports:Rene Ladan2020-08-154-65/+0
* biology/graphlan: Remove the 2.7 limitation on python because it's no longer ...Yuri Victorovich2020-08-141-4/+2
* biology/groopm: Remove python's 2.7 restriction placed here by mistakeYuri Victorovich2020-08-131-5/+2
* biology/diamond: Update to version 2.0.2Joseph Mingrone2020-08-073-4/+49
* biology/py-gtfparse: Update 1.2.0 -> 1.2.1Yuri Victorovich2020-08-072-5/+4
* biology/samtools: Upgrade to 1.10Jason W. Bacon2020-08-035-22/+68
* biology/bcftools: Upgrade to 1.10.2Jason W. Bacon2020-08-036-78/+69
* biology/vt: Patch to work with htslib 1.10.2Jason W. Bacon2020-08-035-1/+62
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