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* biology/pooler: Update to 1.84Jason W. Bacon2022-03-142-4/+4
* biology/gffread: remove local poudriere filesRene Ladan2022-03-072-526/+0
* devel/grpc: Update to 1.44.0Po-Chuan Hsieh2022-03-071-1/+1
* devel/py-qt5, devel/py-sip: Update versionsLoïc Bartoletti2022-03-071-1/+1
* biology/py-loompy: Update 3.0.6 -> 3.0.7Yuri Victorovich2022-03-062-4/+7
* biology/{,py-}libsedml: Update 2.0.27 -> 2.0.28Yuri Victorovich2022-03-065-10/+10
* biology/py-PySCeS: fix with Python ≠ 3.8Thierry Thomas2022-03-021-2/+2
* biology/libsbml: Update WWWPo-Chuan Hsieh2022-02-281-1/+1
* biology/taxonkit: Update 0.9.0 -> 0.10.1Yuri Victorovich2022-02-272-6/+6
* biology/bio-mocha: Update bcftools submodule to 1.15Jason W. Bacon2022-02-262-4/+5
* biology/bcftools: Update to 1.15Jason W. Bacon2022-02-262-5/+4
* biology/samtools: Update to 1.15Jason W. Bacon2022-02-263-4/+6
* biology/htslib: Update to 1.15Jason W. Bacon2022-02-262-4/+4
* biology/py-PySCeS: Update 1.0.0 -> 1.0.1Yuri Victorovich2022-02-252-4/+4
* biology/hyphy: Fix build with clang 13.0.0Joseph Mingrone2022-02-213-0/+270
* biology/{,py-}libsedml: Update 2.0.26 -> 2.0.27Yuri Victorovich2022-02-176-19/+10
* biology/py-dna-features-viewer: Add missing dependencyJason W. Bacon2022-02-121-2/+3
* biology/pooler: update to 1.82Fernando Apesteguía2022-02-102-7/+6
* biology/freebayes: Update to 1.3.6Jason W. Bacon2022-02-062-30/+23
* Update CONFLICTS definitions in categories a* to c*Stefan Eßer2022-02-0614-4/+25
* biology/py-dna-features-viewer: Add py-bcbio-gff depJason W. Bacon2022-02-031-1/+3
* biology/py-bcbio-gff: Read and write Generic Feature Format (GFF)Jason W. Bacon2022-02-034-0/+24
* biology/py-dna-features-viewer: Python lib to visualize DNA featuresJason W. Bacon2022-02-033-0/+35
* biology/hyphy: Update to 2.5.36Joseph Mingrone2022-02-033-4/+6
* security/mbedtls: Update to 2.28.0 and fix make testTijl Coosemans2022-01-281-1/+1
* biology/vcflib: Update to 1.0.3Jason W. Bacon2022-01-283-108/+148
* biology/ngs-sdk: Update 2.11.1 -> 2.11.2Yuri Victorovich2022-01-273-7/+7
* PyQt: Update sip to 6.5.0, reintroduce sip4 and simplify PyQt framework.Loïc Bartoletti2022-01-271-1/+1
* biology/ncbi-cxx-toolkit: Update 25.2.0 -> 26.0.1Yuri Victorovich2022-01-262-14/+11
* devel/cpu_features: Install cmake files, install headers into a dedicated dir...Yuri Victorovich2022-01-261-0/+1
* biology/viennarna: Update 2.4.18 -> 2.5.0Yuri Victorovich2022-01-253-6/+10
* biology/vsearch: Update to 2.21.1Jason W. Bacon2022-01-232-4/+4
* cleanup: remove transitive py27 deprecation (www/qt5-webengine)Rene Ladan2022-01-232-6/+0
* biology/ncbi-blast+: fix build on powerpcPiotr Kubaj2022-01-221-0/+4
* biology/mothur: Update 1.46.1 -> 1.47.0Yuri Victorovich2022-01-212-5/+5
* biology/fastp: Add USE_GCC to hack around seg faultsJason W. Bacon2022-01-211-1/+3
* biology/bowtie2: Update to 2.4.5Jason W. Bacon2022-01-212-4/+6
* biology/py-resdk: Update 13.8.0 -> 14.0.0Yuri Victorovich2022-01-192-4/+4
* biology/kallisto: Update to 0.48.0Jason W. Bacon2022-01-197-27/+97
* *: Clean up some thingsTobias Kortkamp2022-01-171-1/+1
* biology/bio-mocha: Update to 1.14-20220112Jason W. Bacon2022-01-135-507/+8
* biology/diamond: Update to 2.0.14Joseph Mingrone2022-01-132-4/+4
* math/gsl: bump portrevision of consumers after update to 2.7.1Tobias C. Berner2022-01-123-2/+3
* biology/rubygem-bio: Update to 2.0.3Po-Chuan Hsieh2022-01-112-4/+4
* textproc/py-sphinx: Update to 4.3.1Danilo G. Baio2022-01-111-0/+10
* Fix CONFLICTS entries of multiple portsStefan Eßer2022-01-1012-0/+24
* biology/vsearch: Update to 2.19.0Jason W. Bacon2022-01-084-38/+7
* biology/molden: update to 6.7Johannes M Dieterich2022-01-056-890/+48
* biology/phyml: update to 3.3.20211231Fernando Apesteguía2022-01-027-87/+12
* biology/minimap2: Update to 2.24Jason W. Bacon2021-12-312-5/+4
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