aboutsummaryrefslogtreecommitdiff
path: root/biology
Commit message (Expand)AuthorAgeFilesLines
* biology/viennarna: Update 2.4.16 -> 2.4.17Yuri Victorovich2020-12-064-17/+6
* biology/diamond: Update to version 2.0.5Joseph Mingrone2020-12-012-4/+4
* biology/igv: Fix fetch by fixing a small left-over mistakeYuri Victorovich2020-11-301-1/+1
* biology/igv: 2.5.3 -> 2.8.13Yuri Victorovich2020-11-304-26/+310
* biology/tabixpp: fix build on GCC architecturesPiotr Kubaj2020-11-231-1/+1
* Add education virtual categoryAdam Weinberger2020-11-202-2/+2
* biology/hyphy: Update to version 2.5.23Joseph Mingrone2020-11-192-4/+4
* biology/hyphy: Update to version 2.5.22Joseph Mingrone2020-11-182-4/+4
* biology/ncbi-blast+: Upgrade to 2.11.0Jason W. Bacon2020-11-164-21/+34
* biology/py-pysam: Update 0.16.0 -> 0.16.0.1Yuri Victorovich2020-11-152-4/+4
* biology/pooler: Optimise DNA sequencing primer-set combinationsJason W. Bacon2020-11-154-0/+52
* biology/viennarna: Update 2.4.15 -> 2.4.16Yuri Victorovich2020-11-113-4/+5
* biology/py-xenaPython: Update 1.0.10 -> 1.0.14Yuri Victorovich2020-11-112-4/+4
* biology/vt: Fix build with htslib 1.11Jason W. Bacon2020-11-092-2/+13
* biology/gcta: Switch eigen3 dep to USES frameworkJason W. Bacon2020-11-081-2/+1
* biology/bowtie2: Upgrade to 2.4.2Jason W. Bacon2020-11-073-12/+20
* biology/bcftools: Upgrade to 1.11Jason W. Bacon2020-11-056-71/+18
* biology/samtools: Upgrade to 1.11Jason W. Bacon2020-11-055-67/+38
* biology/htslib: Upgrade to 1.11.0Jason W. Bacon2020-11-057-103/+51
* biology/hyphy: Update to version 2.5.21Joseph Mingrone2020-10-304-16/+5
* biology/mummer: fix build on powerpc64 elfv2 and powerpc64lePiotr Kubaj2020-10-252-1/+12
* biology/mothur: fix build on powerpc64lePiotr Kubaj2020-10-191-0/+19
* biology/hyphy: Update to version 2.5.20Joseph Mingrone2020-10-163-4/+15
* biology/py-biopython: Upgrade to 1.78Jason W. Bacon2020-10-162-4/+4
* biology/hyphy: Update to version 2.5.19Joseph Mingrone2020-10-133-24/+4
* biology/gmap: enable on powerpc64lePiotr Kubaj2020-10-091-1/+1
* Update PyQt to 5.15.0, py-sip to 4.19.24 and qscintilla2 to 2.11.5Loïc Bartoletti2020-10-051-0/+1
* Convert REINPLACE_CMD to patch fileSunpoet Po-Chuan Hsieh2020-09-292-1/+22
* Update PYTHON option to use Python 3Sunpoet Po-Chuan Hsieh2020-09-271-5/+2
* Allow building on powerpc64le.Mark Linimon2020-09-271-1/+1
* Canonicalize powerpc64le CXXFLAGS to be the same as powerpc64.Mark Linimon2020-09-271-0/+1
* biology/abyss: Update 2.2.4 -> 2.2.5Yuri Victorovich2020-09-273-6/+5
* biology/ncbi-cxx-toolkit: Fix build on 13Yuri Victorovich2020-09-271-0/+10
* biology/py-biom-format: Fix fetch and relax scipy requirementJoseph Mingrone2020-09-262-4/+5
* biology/ncbi-cxx-toolkit: Update 21.0.0 -> 22.0.0Yuri Victorovich2020-09-253-10/+17
* biology/py-biom-format: Update to version 2.1.8Joseph Mingrone2020-09-252-15/+7
* biology/py-scikit-bio: Fix build on the i386 architectureYuri Victorovich2020-09-241-1/+8
* Also enable on powerpc64le.Mark Linimon2020-09-241-1/+1
* Also enable on powerpc64le.Mark Linimon2020-09-241-1/+1
* biology/py-biom-format: Restore in preparation for an update to v2.1.8Joseph Mingrone2020-09-244-0/+65
* biology/gmap: Upgrade to 2020.09.12Jason W. Bacon2020-09-223-27/+17
* Fix build with -fno-commonStefan Eßer2020-09-213-1/+23
* Unbreak bulk -aAntoine Brodin2020-09-191-1/+1
* Remove expired ports:Rene Ladan2020-09-1922-506/+0
* biology/subread: Add -fcommon for clang 11Jason W. Bacon2020-09-181-0/+1
* biology/canu: Upgrade to 2.1Jason W. Bacon2020-09-144-40/+24
* biology/py-pyfaidx: Update 0.5.5.2 -> 0.5.9.1Yuri Victorovich2020-09-132-5/+4
* biology/gatk: Fix buildYuri Victorovich2020-09-081-3/+3
* biology/viennarna: Update 2.4.14 -> 2.4.15Yuri Victorovich2020-09-072-5/+4
* biology/gatk: Update 4.1.8.0 -> 4.1.8.1Yuri Victorovich2020-09-062-6/+6
generated by cgit v1.2.3 (git 2.25.1) at 2024-04-23 11:43:50 +0000