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* Remove expired ports:Rene Ladan2021-04-0717-380/+0
* One more small cleanup, forgotten yesterday.Mathieu Arnold2021-04-07104-104/+0
* all: Remove all other $FreeBSD keywords.Mathieu Arnold2021-04-063-7/+1
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-06187-188/+0
* biology/pear-merger: enable on aarch64, armv6, armv7, riscv64Piotr Kubaj2021-04-061-5/+0
* biology/trimadap: fix build on powerpc64lePiotr Kubaj2021-04-061-1/+8
* biology/pear-merger: fix build on non-x86Piotr Kubaj2021-04-061-0/+6
* biology/subread: Update to 2.0.2Jason W. Bacon2021-03-304-19/+20
* biology/molden: Fix build with gfortran10Yuri Victorovich2021-03-291-1/+9
* biology/igv: Update 2.8.13 -> 2.9.4Yuri Victorovich2021-03-283-42/+44
* biology/vcflib: fix build on powerpc64lePiotr Kubaj2021-03-281-0/+7
* biology/vsearch: Update to 2.16.0Jason W. Bacon2021-03-242-4/+4
* Mark ports recursively depending on Python 2.7 for expiration on June 23.Rene Ladan2021-03-242-0/+6
* biology/vcf2hap: Generate .hap file from VCF for haplohseqJason W. Bacon2021-03-234-0/+35
* biology/ad2vcf: Add allelic depth info from a SAM stream to a VCF fileJason W. Bacon2021-03-234-0/+36
* - Update Unipro UGENE to version 38.0Alexey Dokuchaev2021-03-235-28/+8
* Fix spelling mistakes, typos, poor wording, hyphenation, jargonisms,Alexey Dokuchaev2021-03-221-1/+1
* biology/vcf-split: Split a multi-sample VCF into single-sample VCFsJason W. Bacon2021-03-214-0/+35
* biology/biolibc: Low-level high-performance bioinformatics libraryJason W. Bacon2021-03-215-0/+33
* biology/htslib: Update to 1.12Jason W. Bacon2021-03-2017-148/+32
* biology/generand: Update to 0.1.2Jason W. Bacon2021-03-202-4/+4
* biology/py-multiqc: Update to 1.10Jason W. Bacon2021-03-202-4/+5
* biology/ngs-sdk: Update 2.10.9 -> 2.11.0Yuri Victorovich2021-03-203-5/+6
* PyQt5: Update PyQt5 to 5.15.4 and py-qtbuilder to 1.9.1Loïc Bartoletti2021-03-161-1/+1
* biology/generand: Generate random genomic data in FAST[AQ], SAM, or VCF formatJason W. Bacon2021-03-154-0/+27
* biology/abyss: Add PORTSCOUT lineYuri Victorovich2021-03-141-0/+2
* Move: biology/py-fastTSNE -> math/py-openTSNEYuri Victorovich2021-03-135-49/+0
* biology/gatk: Fix fetchYuri Victorovich2021-03-131-5/+5
* biology/gatk: Update 4.1.9.0 -> 4.2.0.0Yuri Victorovich2021-03-122-7/+6
* biology/diamond: Update to 2.0.8Joseph Mingrone2021-03-112-4/+4
* biology/hmmer: disable on powerpc64le and powerpcspePiotr Kubaj2021-03-101-1/+1
* biology/py-scikit-bio: fix build on powerpc64Piotr Kubaj2021-03-091-1/+1
* biology/py-scikit-bio: fix build on powerpc64lePiotr Kubaj2021-03-091-2/+5
* PyQt5: Update PyQt5 to 5.15.3, QScintilla2 to 2.12.0, py-qtbuilder to 1.9.0Loïc Bartoletti2021-03-081-1/+1
* Unbreak INDEXAntoine Brodin2021-03-061-1/+1
* py-cutadapt: Update to 3.3Jason W. Bacon2021-03-062-5/+5
* biology/libbigwig: Update 0.4.4 -> 0.4.6Yuri Victorovich2021-03-063-7/+17
* biology/spoa: fix build on non-x86Piotr Kubaj2021-03-041-1/+7
* biology/bwa: fix build on powerpc64lePiotr Kubaj2021-03-021-2/+5
* biology/py-bx-python: Update 0.8.9 -> 0.8.10Yuri Victorovich2021-02-272-9/+6
* biology/hyphy: Update to 2.5.29Joseph Mingrone2021-02-252-4/+4
* biology/hyphy: Update to 2.5.28Joseph Mingrone2021-02-233-4/+5
* Introduce devel/onetbb and mark devel/tbb as legacyGanael LAPLANCHE2021-02-191-2/+2
* biology/spoa: Fix build after recent devel/cereal update; Fix LIB_DEPENDSYuri Victorovich2021-02-192-4/+16
* Mark BROKEN in 13/14 (via latest llvm update).Mark Linimon2021-02-171-0/+3
* biology/diamond: Update to 2.0.7Joseph Mingrone2021-02-172-4/+4
* Update a few GNUstep ports:Neel Chauhan2021-02-141-1/+1
* biology/py-multiqc: Update to 1.9Jason W. Bacon2021-02-052-6/+7
* biology/fastqc: Update to 0.11.9Jason W. Bacon2021-02-042-4/+4
* biology/bioparser: Update 3.0.12 -> 3.0.12-2Yuri Victorovich2021-02-033-17/+17
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