From f53fc71c73ae49eb679b9813efcb19c9fcbf4e8c Mon Sep 17 00:00:00 2001 From: "Vanilla I. Shu" Date: Mon, 16 Mar 1998 06:57:14 +0000 Subject: Povchem is a tool to generate POV file from a PDB(Protein DataBank) entry. One can adjust many parameters for a high quality molecular graphic. PR: ports/6008 Submitted by: Frank Chen Hsiung Chan --- biology/povchem/Makefile | 34 ++++++++++++++++++++++++++++++++++ biology/povchem/distinfo | 3 +++ biology/povchem/files/patch-ab | 20 ++++++++++++++++++++ biology/povchem/files/patch-ac | 11 +++++++++++ biology/povchem/pkg-comment | 1 + biology/povchem/pkg-descr | 6 ++++++ biology/povchem/pkg-plist | 3 +++ 7 files changed, 78 insertions(+) create mode 100644 biology/povchem/Makefile create mode 100644 biology/povchem/distinfo create mode 100644 biology/povchem/files/patch-ab create mode 100644 biology/povchem/files/patch-ac create mode 100644 biology/povchem/pkg-comment create mode 100644 biology/povchem/pkg-descr create mode 100644 biology/povchem/pkg-plist (limited to 'biology/povchem') diff --git a/biology/povchem/Makefile b/biology/povchem/Makefile new file mode 100644 index 000000000000..030556d5836e --- /dev/null +++ b/biology/povchem/Makefile @@ -0,0 +1,34 @@ +# New ports collection Makefile for: povchem +# Version required: 1.0 +# Date created: Mar 14 1998 +# Whom: frankch@waru.life.nthu.edu.tw +# +# $Id$ +# + +DISTNAME= povchem-1.0 +CATEGORIES= biology graphics +MASTER_SITES= http://cherubino.med.jhmi.edu/~paul/PC_Dist/v1.00/ +DISTFILES= povchem.c \ + povchem.cfg \ + periodic.tab + +MAINTAINER= frankch@waru.life.nthu.edu.tw + +NO_WRKSUBDIR= yes + +pre-extract: + @${MKDIR} ${WRKSRC} + @${CP} ${DISTDIR}/povchem.c ${WRKSRC} + @${CP} ${DISTDIR}/povchem.cfg ${WRKSRC} + @${CP} ${DISTDIR}/periodic.tab ${WRKSRC} + +do-extract: + @${TOUCH} ${TOUCH_FLAGS} ${EXTRACT_COOKIE} + +do-install: + @${INSTALL_PROGRAM} ${WRKSRC}/povchem ${PREFIX}/bin + @${INSTALL_DATA} ${WRKSRC}/povchem.cfg ${PREFIX}/etc + @${INSTALL_DATA} ${WRKSRC}/periodic.tab ${PREFIX}/share + +.include diff --git a/biology/povchem/distinfo b/biology/povchem/distinfo new file mode 100644 index 000000000000..e2e088fc8dcf --- /dev/null +++ b/biology/povchem/distinfo @@ -0,0 +1,3 @@ +MD5 (povchem.c) = a8eceada2acdee9f69e018a49033dfc4 +MD5 (povchem.cfg) = 23c6417b12d9562c68e1242b7e339138 +MD5 (periodic.tab) = bdb231f0c8b6e1e37c3b3b025d73a7b0 diff --git a/biology/povchem/files/patch-ab b/biology/povchem/files/patch-ab new file mode 100644 index 000000000000..222f2bfb9fee --- /dev/null +++ b/biology/povchem/files/patch-ab @@ -0,0 +1,20 @@ +--- povchem.c.orig Sat Mar 14 17:19:41 1998 ++++ povchem.c Sat Mar 14 17:20:32 1998 +@@ -482,7 +482,7 @@ + */ + + if (*fileName==NULL) { +- New_String(fileName,"povchem.cfg"); ++ New_String(fileName,"/usr/local/etc/povchem.cfg"); + if ((config=fopen(*fileName,"r"))==NULL) { + puts("Can't read the configuration file \"povchem.cfg\"!"); + perror("Reason"); +@@ -731,7 +731,7 @@ + + no_config: + +- if (!PERIODIC_TABLE_FILE) New_String(&PERIODIC_TABLE_FILE,"periodic.tab"); ++ if (!PERIODIC_TABLE_FILE) New_String(&PERIODIC_TABLE_FILE,"/usr/local/share/periodic.tab"); + if (!FINISH) New_String(&FINISH,"Plastic"); + if (!FINISH_DECLARATION) New_String(&FINISH_DECLARATION,"\ + finish {\n\ diff --git a/biology/povchem/files/patch-ac b/biology/povchem/files/patch-ac new file mode 100644 index 000000000000..bf45153e7732 --- /dev/null +++ b/biology/povchem/files/patch-ac @@ -0,0 +1,11 @@ +--- povchem.cfg.orig Sun Mar 15 14:14:16 1998 ++++ povchem.cfg Sun Mar 15 14:15:13 1998 +@@ -331,7 +331,7 @@ + # the type of image POV-Ray generates - usually TGA (also called TARGA). + # + #Viewer = c:\util\dvpeg.exe +-Viewer = /usr/local/bin/xv ++Viewer = /usr/X11R6/bin/xv + + # If ColorSplit is Proportional, 'Power' determines the power of the vdW radii + # to which the point of color change is proportional. See the manual for diff --git a/biology/povchem/pkg-comment b/biology/povchem/pkg-comment new file mode 100644 index 000000000000..c0d5024801f5 --- /dev/null +++ b/biology/povchem/pkg-comment @@ -0,0 +1 @@ +Simple yet powerful tool to generate POV from a PDB file diff --git a/biology/povchem/pkg-descr b/biology/povchem/pkg-descr new file mode 100644 index 000000000000..0edf525c2059 --- /dev/null +++ b/biology/povchem/pkg-descr @@ -0,0 +1,6 @@ +PovChem is a powerful tool to generate a POV format file from a PDB entry. +It supports CPK, Ball-n-Stick and Cylinder model. You could adjust a lot +of parameters to get a good molecuar graphic. + +The document could be found at + http://cherubino.med.jhmi.edu/~paul/Manual.html diff --git a/biology/povchem/pkg-plist b/biology/povchem/pkg-plist new file mode 100644 index 000000000000..85c28b24592a --- /dev/null +++ b/biology/povchem/pkg-plist @@ -0,0 +1,3 @@ +bin/povchem +etc/povchem.cfg +share/periodic.tab -- cgit v1.2.3