include/io_lib/Read.h
include/io_lib/abi.h
include/io_lib/alf.h
include/io_lib/array.h
include/io_lib/bam.h
include/io_lib/compress.h
include/io_lib/compression.h
include/io_lib/cram.h
include/io_lib/cram_codecs.h
include/io_lib/cram_decode.h
include/io_lib/cram_encode.h
include/io_lib/cram_index.h
include/io_lib/cram_io.h
include/io_lib/cram_structs.h
include/io_lib/deflate_interlaced.h
include/io_lib/dstring.h
include/io_lib/error.h
include/io_lib/expFileIO.h
include/io_lib/fpoint.h
include/io_lib/hash_table.h
include/io_lib/io_lib_config.h
include/io_lib/jenkins_lookup3.h
include/io_lib/mFILE.h
include/io_lib/mach-io.h
include/io_lib/md5.h
include/io_lib/misc.h
include/io_lib/open_trace_file.h
include/io_lib/os.h
include/io_lib/plain.h
include/io_lib/pooled_alloc.h
include/io_lib/sam_header.h
include/io_lib/scf.h
include/io_lib/scf_extras.h
include/io_lib/scram.h
include/io_lib/seqIOABI.h
include/io_lib/seqIOCTF.h
include/io_lib/sff.h
include/io_lib/srf.h
include/io_lib/stdio_hack.h
include/io_lib/string_alloc.h
include/io_lib/tar_format.h
include/io_lib/traceType.h
include/io_lib/translate.h
include/io_lib/vlen.h
include/io_lib/xalloc.h
include/io_lib/zfio.h
include/io_lib/ztr.h
bin/append_sff
bin/convert_trace
bin/cram_dump
bin/cram_index
bin/cram_to_sam
bin/extract_fastq
bin/extract_qual
bin/extract_seq
bin/get_comment
bin/hash_exp
bin/hash_extract
bin/hash_list
bin/hash_sff
bin/hash_tar
bin/index_tar
bin/io_lib-config
bin/makeSCF
bin/sam_convert
bin/sam_to_cram
bin/scf_dump
bin/scf_info
bin/scf_update
bin/scram_merge
bin/scramble
bin/srf2fasta
bin/srf2fastq
bin/srf_dump_all
bin/srf_extract_hash
bin/srf_extract_linear
bin/srf_filter
bin/srf_index_hash
bin/srf_info
bin/srf_list
bin/trace_dump
bin/ztr_dump
lib/libstaden-read.a
lib/libstaden-read.la
lib/libstaden-read.so
lib/libstaden-read.so.3
@dirrm include/io_lib