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@dirrm include/seqan/system @dirrm include/seqan/store @dirrm include/seqan/statistics @dirrm include/seqan/sequence_journaled @dirrm include/seqan/sequence @dirrm include/seqan/seeds2 @dirrm include/seqan/seeds @dirrm include/seqan/score @dirrm include/seqan/refinement @dirrm include/seqan/random @dirrm include/seqan/platform @dirrm include/seqan/pipe @dirrm include/seqan/parallel @dirrm include/seqan/modifier @dirrm include/seqan/misc @dirrm include/seqan/map @dirrm include/seqan/index @dirrm include/seqan/graph_types @dirrm include/seqan/graph_msa @dirrm include/seqan/graph_align @dirrm include/seqan/graph_algorithms @dirrm include/seqan/find_motif @dirrm include/seqan/find2 @dirrm include/seqan/find @dirrm include/seqan/file @dirrm include/seqan/consensus @dirrm include/seqan/chaining @dirrm include/seqan/blast @dirrm include/seqan/basic @dirrm include/seqan/align @dirrm include/seqan