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include/seqan3/alignment/matrix/detail/affine_cell_proxy.hpp
include/seqan3/alignment/matrix/detail/aligned_sequence_builder.hpp
include/seqan3/alignment/matrix/detail/alignment_matrix_column_major_range_base.hpp
include/seqan3/alignment/matrix/detail/alignment_optimum.hpp
include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column.hpp
include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_banded.hpp
include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_base.hpp
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include/seqan3/alignment/matrix/detail/alignment_trace_matrix_base.hpp
include/seqan3/alignment/matrix/detail/alignment_trace_matrix_full.hpp
include/seqan3/alignment/matrix/detail/alignment_trace_matrix_full_banded.hpp
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include/seqan3/alignment/matrix/detail/edit_distance_trace_matrix_full.hpp
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include/seqan3/alignment/matrix/detail/row_wise_matrix.hpp
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include/seqan3/alignment/pairwise/detail/alignment_algorithm_state.hpp
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include/seqan3/alignment/pairwise/detail/policy_affine_gap_recursion_banded.hpp
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include/seqan3/alignment/pairwise/detail/policy_affine_gap_with_trace_recursion_banded.hpp
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include/seqan3/alignment/pairwise/detail/policy_optimum_tracker_simd.hpp
include/seqan3/alignment/pairwise/detail/policy_scoring_scheme.hpp
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include/seqan3/alignment/pairwise/edit_distance_unbanded.hpp
include/seqan3/alignment/pairwise/policy/affine_gap_init_policy.hpp
include/seqan3/alignment/pairwise/policy/affine_gap_policy.hpp
include/seqan3/alignment/pairwise/policy/alignment_matrix_policy.hpp
include/seqan3/alignment/pairwise/policy/all.hpp
include/seqan3/alignment/pairwise/policy/find_optimum_policy.hpp
include/seqan3/alignment/pairwise/policy/scoring_scheme_policy.hpp
include/seqan3/alignment/pairwise/policy/simd_affine_gap_policy.hpp
include/seqan3/alignment/pairwise/policy/simd_find_optimum_policy.hpp
include/seqan3/alignment/scoring/all.hpp
include/seqan3/alignment/scoring/aminoacid_scoring_scheme.hpp
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include/seqan3/alphabet/aminoacid/aa10murphy.hpp
include/seqan3/alphabet/aminoacid/aa20.hpp
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include/seqan3/alphabet/nucleotide/dna15.hpp
include/seqan3/alphabet/nucleotide/dna16sam.hpp
include/seqan3/alphabet/nucleotide/dna3bs.hpp
include/seqan3/alphabet/nucleotide/dna4.hpp
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include/seqan3/alphabet/nucleotide/rna4.hpp
include/seqan3/alphabet/nucleotide/rna5.hpp
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include/seqan3/alphabet/quality/all.hpp
include/seqan3/alphabet/quality/concept.hpp
include/seqan3/alphabet/quality/phred42.hpp
include/seqan3/alphabet/quality/phred63.hpp
include/seqan3/alphabet/quality/phred68solexa.hpp
include/seqan3/alphabet/quality/phred94.hpp
include/seqan3/alphabet/quality/phred_base.hpp
include/seqan3/alphabet/quality/qualified.hpp
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include/seqan3/alphabet/views/to_char.hpp
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include/seqan3/alphabet/views/translate.hpp
include/seqan3/alphabet/views/translate_join.hpp
include/seqan3/alphabet/views/trim_quality.hpp
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include/seqan3/contrib/stream/bz2_istream.hpp
include/seqan3/contrib/stream/bz2_ostream.hpp
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include/seqan3/submodules/sdsl-lite/include/sdsl/lcp.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/lcp_bitcompressed.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/lcp_byte.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/lcp_dac.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/lcp_support_sada.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/lcp_support_tree.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/lcp_support_tree2.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/lcp_vlc.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/lcp_wt.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/louds_tree.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/memory_management.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/memory_tracking.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/nearest_neighbour_dictionary.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/nn_dict_dynamic.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/platform.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/qsufsort.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/ram_filebuf.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/ram_fs.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/rank_support.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/rank_support_scan.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/rank_support_v.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/rank_support_v5.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/rmq_succinct_sada.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/rmq_succinct_sct.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/rmq_support.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/rmq_support_sparse_table.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/rrr_helper.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/rrr_vector.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/rrr_vector_15.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/sd_vector.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/sdsl_concepts.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/select_support.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/select_support_mcl.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/select_support_scan.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/sfstream.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/sorted_int_stack.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/sorted_multi_stack_support.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/sorted_stack_support.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/structure_tree.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/structure_tree.hpp.cmake
include/seqan3/submodules/sdsl-lite/include/sdsl/suffix_array_algorithm.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/suffix_array_helper.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/suffix_arrays.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/suffix_tree_algorithm.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/suffix_tree_helper.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/suffix_trees.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/uint128_t.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/uint256_t.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/uintx_t.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/util.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/vectors.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/version.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/vlc_vector.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/wavelet_trees.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/wm_int.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/wt_algorithm.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/wt_ap.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/wt_blcd.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/wt_gmr.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/wt_helper.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/wt_huff.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/wt_hutu.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/wt_int.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/wt_pc.hpp
include/seqan3/submodules/sdsl-lite/include/sdsl/wt_rlmn.hpp
include/seqan3/utility/all.hpp
include/seqan3/utility/char_operations/all.hpp
include/seqan3/utility/char_operations/predicate.hpp
include/seqan3/utility/char_operations/predicate_detail.hpp
include/seqan3/utility/char_operations/pretty_print.hpp
include/seqan3/utility/char_operations/transform.hpp
include/seqan3/utility/concept/all.hpp
include/seqan3/utility/concept/exposition_only/core_language.hpp
include/seqan3/utility/container/aligned_allocator.hpp
include/seqan3/utility/container/all.hpp
include/seqan3/utility/container/concept.hpp
include/seqan3/utility/container/dynamic_bitset.hpp
include/seqan3/utility/container/small_string.hpp
include/seqan3/utility/container/small_vector.hpp
include/seqan3/utility/detail/bits_of.hpp
include/seqan3/utility/detail/integer_traits.hpp
include/seqan3/utility/detail/multi_invocable.hpp
include/seqan3/utility/detail/to_little_endian.hpp
include/seqan3/utility/detail/type_name_as_string.hpp
include/seqan3/utility/math.hpp
include/seqan3/utility/parallel/all.hpp
include/seqan3/utility/parallel/detail/all.hpp
include/seqan3/utility/parallel/detail/latch.hpp
include/seqan3/utility/parallel/detail/reader_writer_manager.hpp
include/seqan3/utility/parallel/detail/spin_delay.hpp
include/seqan3/utility/range/all.hpp
include/seqan3/utility/range/concept.hpp
include/seqan3/utility/simd/algorithm.hpp
include/seqan3/utility/simd/all.hpp
include/seqan3/utility/simd/concept.hpp
include/seqan3/utility/simd/detail/builtin_simd.hpp
include/seqan3/utility/simd/detail/builtin_simd_intrinsics.hpp
include/seqan3/utility/simd/detail/debug_stream_simd.hpp
include/seqan3/utility/simd/detail/default_simd_backend.hpp
include/seqan3/utility/simd/detail/default_simd_length.hpp
include/seqan3/utility/simd/detail/simd_algorithm_avx2.hpp
include/seqan3/utility/simd/detail/simd_algorithm_avx512.hpp
include/seqan3/utility/simd/detail/simd_algorithm_sse4.hpp
include/seqan3/utility/simd/simd.hpp
include/seqan3/utility/simd/simd_traits.hpp
include/seqan3/utility/simd/views/all.hpp
include/seqan3/utility/simd/views/iota_simd.hpp
include/seqan3/utility/simd/views/to_simd.hpp
include/seqan3/utility/tuple/all.hpp
include/seqan3/utility/tuple/common_tuple.hpp
include/seqan3/utility/tuple/concept.hpp
include/seqan3/utility/tuple/pod_tuple.hpp
include/seqan3/utility/tuple/pop_front.hpp
include/seqan3/utility/tuple/split.hpp
include/seqan3/utility/type_list/all.hpp
include/seqan3/utility/type_list/detail/type_list_algorithm.hpp
include/seqan3/utility/type_list/traits.hpp
include/seqan3/utility/type_list/type_list.hpp
include/seqan3/utility/type_pack/all.hpp
include/seqan3/utility/type_pack/detail/type_pack_algorithm.hpp
include/seqan3/utility/type_pack/traits.hpp
include/seqan3/utility/type_traits/all.hpp
include/seqan3/utility/type_traits/basic.hpp
include/seqan3/utility/type_traits/concept.hpp
include/seqan3/utility/type_traits/detail/transformation_trait_or.hpp
include/seqan3/utility/type_traits/function_traits.hpp
include/seqan3/utility/type_traits/lazy_conditional.hpp
include/seqan3/utility/views/all.hpp
include/seqan3/utility/views/chunk.hpp
include/seqan3/utility/views/convert.hpp
include/seqan3/utility/views/deep.hpp
include/seqan3/utility/views/elements.hpp
include/seqan3/utility/views/enforce_random_access.hpp
include/seqan3/utility/views/interleave.hpp
include/seqan3/utility/views/join_with.hpp
include/seqan3/utility/views/pairwise_combine.hpp
include/seqan3/utility/views/repeat.hpp
include/seqan3/utility/views/repeat_n.hpp
include/seqan3/utility/views/single_pass_input.hpp
include/seqan3/utility/views/slice.hpp
include/seqan3/utility/views/to.hpp
include/seqan3/utility/views/type_reduce.hpp
include/seqan3/utility/views/zip.hpp
include/seqan3/version.hpp
share/cmake/seqan3/seqan3-config-version.cmake
share/cmake/seqan3/seqan3-config.cmake