bin/fill-aa bin/fill-an-ac bin/fill-fs bin/fill-ref-md5 bin/vcf-annotate bin/vcf-compare bin/vcf-concat bin/vcf-consensus bin/vcf-contrast bin/vcf-convert bin/vcf-fix-newlines bin/vcf-fix-ploidy bin/vcf-indel-stats bin/vcf-isec bin/vcf-merge bin/vcf-phased-join bin/vcf-query bin/vcf-shuffle-cols bin/vcf-sort bin/vcf-stats bin/vcf-subset bin/vcf-to-tab bin/vcf-tstv bin/vcf-validator bin/vcftools %%SITE_PERL%%/FaSlice.pm %%SITE_PERL%%/Vcf.pm %%SITE_PERL%%/VcfStats.pm man/man1/vcftools.1.gz