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# Created by: Jason W. Bacon <bacon4000@gmail.com>
# $FreeBSD$
############################################################################
# http://www.neuro.mcw.edu/Ports has the latest source distribution from
# which this port is built. It will be updated as time permits.
#
# afni.nimh.nih.gov is the ultimate source for AFNI, and will always
# contain the latest source release. If this port is not up to date,
# you can download the latest sources and build manually.
PORTNAME= afni
PORTVERSION= 2015.11.13
CATEGORIES= science biology graphics
MASTER_SITES= http://www.acadix.biz/Ports/distfiles/
MAINTAINER= bacon4000@gmail.com
COMMENT= Advanced Functional Neuro Imaging
LICENSE= GPLv2
BUILD_DEPENDS= gm4:devel/m4
LIB_DEPENDS= libXm.so:x11-toolkits/open-motif \
libR.so:math/R \
libgsl.so:math/gsl \
libnetcdff.so:science/netcdf-fortran \
libxml2.so:textproc/libxml2 \
libf2c.so:lang/f2c
RUN_DEPENDS= mpeg_encode:multimedia/mpeg_encode \
ppmtogif:graphics/netpbm \
endian:sysutils/endian \
qhull:math/qhull5
CONFLICTS= im-[0-9]* \
nifticlib-[0-9]* \
open-usp-tukubai-[0-9]*
USES= gettext gmake iconv jpeg:run motif perl5 python shebangfix tar:xz
SHEBANG_FILES= suma_change_spec \
3dPAR2AFNI.pl \
python_scripts/afni_restproc.py \
python_scripts/lib_fat_Rfactor.py \
pkundu/meica.libs/siemens_me2nii.py
USE_GNOME= glib20
.include <bsd.port.options.mk>
BROKEN_sparc64= Does not compile: "undefined reference to '_mcount'"
USE_GL= glw glu
USE_XORG= xi
MAKE_ENV= CC="${CC}" R_SHARE_DIR=${LOCALBASE}/lib/R/share
MAKE_JOBS_UNSAFE=yes
ALL_TARGET= vastness suma
###########################################################################
# Install parameters
SUB_FILES= pkg-message afni.cshrc afni.profile
INSTALL_WRKSRC= ${WRKSRC}/BSD
PRESTAGE= ${WRKSRC}/prestage
X11R6_FILES= coxplot/Makefile \
coxplot/Makefile.f2c \
3DEdge/src/Makefile \
SUMA/SUMA_Makefile \
edt_blur.c \
suma_datasets.c \
SUMA/SUMA_Load_Surface_Object.c \
SUMA/SUMA_MiscFunc.c \
SUMA/SUMA_ParseCommands.c \
SUMA/GLUT/libglut/glut_event.c \
SUMA/SUMA_Surface_IO.c
post-extract:
.for f in ${X11R6_FILES}
@${REINPLACE_CMD} \
-e 's|/usr/X11R6|$${LOCALBASE}|g' ${WRKSRC}/${f}
.endfor
@${REINPLACE_CMD} \
-E 's|AFNI_[0-9_]+|${PORTVERSION}|g' ${WRKSRC}/AFNI_label.h
@${REINPLACE_CMD} \
-e "s|%%PREFIX%%|${PREFIX}|g" ${WRKSRC}/afni.1
@${CP} ${FILESDIR}/Makefile ${WRKSRC}
@${RM} ${WRKSRC}/3DEdge/src/Makefile.orig
# shebangfix misses /bin/python on 10.1
post-patch:
${REINPLACE_CMD} -e "s|-lglib|-lglib-2.0|g" \
${WRKSRC}/SUMA/SUMA_Makefile
${REINPLACE_CMD} -e "s|/bin/python|${PYTHON_CMD}|g" \
${WRKSRC}/python_scripts/lib_fat_Rfactor.py
${REINPLACE_CMD} \
-e 's|os\.path\.dirname(sys\.argv\[0\])|"${PREFIX}/libexec"|g' \
${WRKSRC}/pkundu/meica.py
${REINPLACE_CMD} \
-e 's|g_info|afni_g_info|g' \
${WRKSRC}/rickr/Dimon.c \
${WRKSRC}/rickr/Dimon1.c \
${WRKSRC}/afni_history_rickr.c \
${WRKSRC}/mri_dicom_stuff.c \
${WRKSRC}/mri_process_siemens.c \
${WRKSRC}/mri_read_dicom.c \
${WRKSRC}/to3d.c \
${WRKSRC}/mri_dicom_stuff.h
post-build:
${MKDIR} ${PRESTAGE}/bin \
${PRESTAGE}/scripts \
${PRESTAGE}/lib \
${PRESTAGE}/include \
${PRESTAGE}/trash \
${PRESTAGE}/doc \
${PRESTAGE}/share
${MV} ${INSTALL_WRKSRC}/libf2c.a \
${PRESTAGE}/trash
${MV} ${INSTALL_WRKSRC}/*.a \
${INSTALL_WRKSRC}/*.so \
${PRESTAGE}/lib
${MV} ${INSTALL_WRKSRC}/funstuff \
${INSTALL_WRKSRC}/AFNI.*rc \
${INSTALL_WRKSRC}/afnigui* \
${PRESTAGE}/share
${MV} ${INSTALL_WRKSRC}/*.h \
${PRESTAGE}/include
${MV} ${INSTALL_WRKSRC}/README* \
${PRESTAGE}/doc
for binary in `${FILE} ${INSTALL_WRKSRC}/* | fgrep 'ELF' | ${AWK} -F ':' ' { print $$1 }'` ; do \
${MV} $${binary} ${PRESTAGE}/bin ; \
done
${MV} ${INSTALL_WRKSRC}/* \
${PRESTAGE}/scripts
${MV} ${PRESTAGE}/scripts/meica.libs ${PRESTAGE}
do-install:
${MKDIR} ${STAGEDIR}${DATADIR} \
${STAGEDIR}${PREFIX}/lib/afni \
${STAGEDIR}${PREFIX}/include/afni
for f in ${PRESTAGE}/lib/*; do \
${STRIP_CMD} $${f}; \
done
${INSTALL_DATA} ${PRESTAGE}/lib/* ${STAGEDIR}${PREFIX}/lib/afni
${INSTALL_DATA} ${PRESTAGE}/include/* ${STAGEDIR}${PREFIX}/include/afni
cd ${PRESTAGE}/share && ${COPYTREE_SHARE} . ${STAGEDIR}${DATADIR}
${INSTALL_PROGRAM} ${PRESTAGE}/bin/* ${STAGEDIR}${PREFIX}/bin
${INSTALL_SCRIPT} ${PRESTAGE}/scripts/* ${STAGEDIR}${PREFIX}/bin
cd ${PRESTAGE} && ${COPYTREE_BIN} meica.libs \
${STAGEDIR}${PREFIX}/libexec
${INSTALL_DATA} ${WRKSRC}/Atlases/* ${STAGEDIR}${DATADIR}
${INSTALL_MAN} ${WRKSRC}/afni.1 ${STAGEDIR}${MAN1PREFIX}/man/man1
${MKDIR} ${STAGEDIR}${DOCSDIR} ${STAGEDIR}${PREFIX}/etc/mri
${INSTALL_DATA} ${PRESTAGE}/doc/* ${STAGEDIR}${DOCSDIR}
${INSTALL_SCRIPT} ${WRKDIR}/afni.cshrc ${WRKDIR}/afni.profile \
${STAGEDIR}${PREFIX}/etc/mri
.include <bsd.port.mk>
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