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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2021-04-18 15:52:07 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2021-04-18 15:53:14 +0000 |
| commit | 48ddc73c5822130dd3f00361ec6998eec0a29e6d (patch) | |
| tree | 54ef8b727359740918f5c306823aaca5d9cdd7de /biology | |
| parent | e4ca154bd2203ef7c7fe4ad0a6472991f7f7cbb4 (diff) | |
| download | ports-48ddc73c5822130dd3f00361ec6998eec0a29e6d.tar.gz ports-48ddc73c5822130dd3f00361ec6998eec0a29e6d.zip | |
biology/bowtie2: Add support for powerpc64le
PR: 255092
Submitted by: pkubaj
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/bowtie2/Makefile | 13 | ||||
| -rw-r--r-- | biology/bowtie2/distinfo | 4 | ||||
| -rw-r--r-- | biology/bowtie2/files/patch-Makefile | 4 |
3 files changed, 17 insertions, 4 deletions
diff --git a/biology/bowtie2/Makefile b/biology/bowtie2/Makefile index 198cf295e73e..2cd89b18642b 100644 --- a/biology/bowtie2/Makefile +++ b/biology/bowtie2/Makefile @@ -12,7 +12,7 @@ LICENSE_FILE= ${WRKSRC}/LICENSE # Requires a 64-bit processor and depends on hard-coded SSE instructions # Experimental support for AARCH64 as of 2.3.5 -ONLY_FOR_ARCHS= aarch64 amd64 +ONLY_FOR_ARCHS= aarch64 amd64 powerpc64le LIB_DEPENDS= libtbb.so:devel/onetbb RUN_DEPENDS= bash:shells/bash @@ -23,11 +23,22 @@ USE_GITHUB= yes SHEBANG_FILES= bowtie2 bowtie2-build bowtie2-inspect \ scripts/bowtie2-hbb.sh scripts/*.pl GH_ACCOUNT= BenLangmead +GH_TUPLE= nemequ:simde:422ed9c:simde OPTIONS_DEFINE= DOCS EXAMPLES SUB_FILES= bowtie2-test +.include <bsd.port.options.mk> + +.if ${ARCH} != amd64 +post-extract: + (cd ${WRKSRC_simde}; \ + ${COPYTREE_SHARE} . ${WRKSRC}/third_party/simde/) + +MAKE_ENV= POPCNT_CAPABILITY=0 +.endif + pre-configure: @${REINPLACE_CMD} \ -e 's|^RELEASE_FLAGS|# RELEASE_FLAGS|' \ diff --git a/biology/bowtie2/distinfo b/biology/bowtie2/distinfo index 100d7cba6fb8..57c4443eb8df 100644 --- a/biology/bowtie2/distinfo +++ b/biology/bowtie2/distinfo @@ -1,3 +1,5 @@ -TIMESTAMP = 1604617529 +TIMESTAMP = 1618499065 SHA256 (BenLangmead-bowtie2-v2.4.2_GH0.tar.gz) = ea33a1562faf759b21b3a905e20b87a3524ac4e53af8cd723d9a9f31ee159c8a SIZE (BenLangmead-bowtie2-v2.4.2_GH0.tar.gz) = 10590144 +SHA256 (nemequ-simde-422ed9c_GH0.tar.gz) = 3e7e962b499212cdddcaeca973d1c15d71a4b620afb46113d936ce5c3a8236ba +SIZE (nemequ-simde-422ed9c_GH0.tar.gz) = 332230 diff --git a/biology/bowtie2/files/patch-Makefile b/biology/bowtie2/files/patch-Makefile index 092870a96abf..f082b4abb0d3 100644 --- a/biology/bowtie2/files/patch-Makefile +++ b/biology/bowtie2/files/patch-Makefile @@ -1,4 +1,4 @@ ---- Makefile.orig 2020-11-05 23:04:50 UTC +--- Makefile.orig 2020-10-06 03:46:41 UTC +++ Makefile @@ -24,7 +24,7 @@ PREFIX := /usr/local @@ -33,7 +33,7 @@ CPPFLAGS += -Ithird_party/simde SANITIZER_FLAGS := -else ifeq (ppc64le,$(shell uname -m)) -+else ifeq (ppc64le,$(shell uname -p)) ++else ifeq (powerpc64le,$(shell uname -p)) BITS := 64 SSE_FLAG := CXXFLAGS += -fopenmp-simd |