diff options
Diffstat (limited to 'biology/jalview/Makefile')
| -rw-r--r-- | biology/jalview/Makefile | 64 |
1 files changed, 55 insertions, 9 deletions
diff --git a/biology/jalview/Makefile b/biology/jalview/Makefile index 33341bd764c1..f99bd8d81676 100644 --- a/biology/jalview/Makefile +++ b/biology/jalview/Makefile @@ -1,27 +1,73 @@ # Created by: Fernan Aguero <fernan@iib.unsam.edu.ar> PORTNAME= jalview -PORTVERSION= 2.07 -PORTREVISION= 3 +DISTVERSION= 2.11.1.4 CATEGORIES= biology java -MASTER_SITES= http://www.jalview.org/source/ -DISTNAME= ${PORTNAME}_${PORTVERSION:S/./_/} +MASTER_SITES= https://www.jalview.org/source/ +DISTNAME= ${PORTNAME}_${DISTVERSION:S/./_/g} +DISTFILES= ${DISTNAME}${EXTRACT_SUFX} +EXTRACT_ONLY= ${PORTNAME}_${DISTVERSION:S/./_/g}${EXTRACT_SUFX} -MAINTAINER= ports@FreeBSD.org +EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} + +MAINTAINER= yuri@FreeBSD.org COMMENT= Viewer and editor for multiple sequence alignments +LICENSE= GPLv3 +LICENSE_FILE= ${WRKSRC}/LICENSE + +BUILD_DEPENDS= gradle:devel/gradle + USE_JAVA= yes -JAVA_VERSION= 8 -USE_ANT= yes -ALL_TARGET= makejars +JAVA_VERSION= 11 + WRKSRC= ${WRKDIR}/${PORTNAME} +USE_LOCALE= en_US.UTF-8 + DATADIR= ${JAVASHAREDIR}/${PORTNAME} SUB_FILES= jalview.sh +SUB_LIST= JAVA=${JAVA} + +NO_ARCH= yes + +# to rebuild the deps archive: +# 1. set DEV_UPDATE_MODE=yes +# 2. make makesum build +# 3. upload the *-deps archive +# 4. set DEV_UPDATE_MODE=no +# 5. make clean makesum + +DEV_UPDATE_MODE= no + +DEPS_CACHE_DIR= ${WRKDIR} + +.if (${DEV_UPDATE_MODE} == "yes") +post-build: + @cd ${DEPS_CACHE_DIR} && ${TAR} czf ${DISTDIR}/${PORTNAME}-${DISTVERSION}-deps${EXTRACT_SUFX} gradle-${PORTNAME} + @${ECHO} "(!!!) Please upload the deps archive: ${DISTDIR}/${PORTNAME}-${DISTVERSION}-deps${EXTRACT_SUFX}" +.else +MASTER_SITES+= LOCAL/yuri/:deps +DISTFILES+= ${PORTNAME}-${DISTVERSION}-deps${EXTRACT_SUFX}:deps +GRADLE_ARGS= --offline + +post-extract: # need a separate extract step because the cache is in /tmp, and not under work/ like with maven + @cd ${DEPS_CACHE_DIR} && ${TAR} xzf ${DISTDIR}/${PORTNAME}-${DISTVERSION}-deps${EXTRACT_SUFX} +.endif + +BINARY_ALIAS= git=false java=${JAVA} + +PLIST_FILES= bin/jalview \ + ${DATADIR}/jalview.jar + +do-build: + @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} gradle \ + --gradle-user-home ${DEPS_CACHE_DIR}/gradle-${PORTNAME} --project-cache-dir ${DEPS_CACHE_DIR}/gradle-${PORTNAME} \ + ${GRADLE_ARGS} --build-cache shadowJar do-install: ${INSTALL_SCRIPT} ${WRKDIR}/jalview.sh ${STAGEDIR}${PREFIX}/bin/jalview @${MKDIR} ${STAGEDIR}${DATADIR} - ${INSTALL_DATA} ${WRKSRC}/dist/* ${STAGEDIR}${DATADIR} + ${INSTALL_DATA} ${WRKSRC}/build/libs/jalview-all-${DISTVERSION}-j${JAVA_VERSION}.jar ${STAGEDIR}${DATADIR}/jalview.jar .include <bsd.port.mk> |