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| author | Wen Heping <wen@FreeBSD.org> | 2024-02-03 00:56:59 +0000 |
|---|---|---|
| committer | Wen Heping <wen@FreeBSD.org> | 2024-02-03 00:58:29 +0000 |
| commit | 3f853a69d83c9929a7c7eb9f5ad3425936e0c9da (patch) | |
| tree | 99d0231f09a63f4fb23593c030366e6bc4c08bd5 | |
| parent | ca41103d32ee6a8fb8f1fdc644032c0743944f49 (diff) | |
| download | ports-3f853a69d83c9929a7c7eb9f5ad3425936e0c9da.tar.gz ports-3f853a69d83c9929a7c7eb9f5ad3425936e0c9da.zip | |
biology/python-nexus: Update to 2.9.0 and fix build with python-3.11
PR: 275494
| -rw-r--r-- | biology/python-nexus/Makefile | 9 | ||||
| -rw-r--r-- | biology/python-nexus/distinfo | 6 | ||||
| -rw-r--r-- | biology/python-nexus/files/patch-2to3 | 19 |
3 files changed, 9 insertions, 25 deletions
diff --git a/biology/python-nexus/Makefile b/biology/python-nexus/Makefile index f4c08ebdbb7f..06f7e0c6a6c4 100644 --- a/biology/python-nexus/Makefile +++ b/biology/python-nexus/Makefile @@ -1,5 +1,5 @@ PORTNAME= python-nexus -PORTVERSION= 1.63 +PORTVERSION= 2.9.0 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -11,8 +11,11 @@ WWW= http://simon.net.nz/articles/python-nexus LICENSE= BSD3CLAUSE #LICENSE_FILE= ${WRKSRC}/LICENSE -USES= python shebangfix -SHEBANG_FILES= nexus/bin/*.py +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}clldutils>=0:devel/py-clldutils@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}termcolor>=0:devel/py-termcolor@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}newick>=0:biology/py-newick@${PY_FLAVOR} + +USES= python USE_PYTHON= autoplist distutils .include <bsd.port.mk> diff --git a/biology/python-nexus/distinfo b/biology/python-nexus/distinfo index cd63640bc1f2..70ddcd274d66 100644 --- a/biology/python-nexus/distinfo +++ b/biology/python-nexus/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1537606240 -SHA256 (python-nexus-1.63.tar.gz) = 5c9f39bc08a8459078cc65e74f30402df133f8eb06d7acf2c7667e8761657312 -SIZE (python-nexus-1.63.tar.gz) = 37986 +TIMESTAMP = 1706882239 +SHA256 (python-nexus-2.9.0.tar.gz) = 9eea1a0e79dc20b84310a84d4cc90665b1a359a74c17cc0a7602e54156188204 +SIZE (python-nexus-2.9.0.tar.gz) = 34242 diff --git a/biology/python-nexus/files/patch-2to3 b/biology/python-nexus/files/patch-2to3 deleted file mode 100644 index 07cc1ef4371c..000000000000 --- a/biology/python-nexus/files/patch-2to3 +++ /dev/null @@ -1,19 +0,0 @@ ---- nexus/bin/nexuscheck.py.orig 2018-04-10 09:11:00 UTC -+++ nexus/bin/nexuscheck.py -@@ -1,6 +1,6 @@ - #!/usr/bin/env python - import warnings --from __future__ import print_function -+ - from nexus import NexusReader, VERSION - from nexus.checker import checkers - -@@ -44,7 +44,7 @@ if __name__ == '__main__': - if len(warned): - print("Warnings encountered in reading nexus:") - for w in warned: -- print("\t%s" % w) -+ print(("\t%s" % w)) - - for checker in checkers: - checker(nex, verbose=args.verbose).status() |