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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2022-11-24 14:10:13 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2022-11-24 14:10:13 +0000 |
| commit | 4b987075629fc9516f81c5f2b94afe6c5f04f9d3 (patch) | |
| tree | 106f05274bedc46f09d58a165b6654f4eb0bc736 | |
| parent | bbdc4e71a8bf27e920b8dedb36846682ae3f397c (diff) | |
| download | ports-4b987075629fc9516f81c5f2b94afe6c5f04f9d3.tar.gz ports-4b987075629fc9516f81c5f2b94afe6c5f04f9d3.zip | |
biology/megahit: Add cmake patch to respect ports build flags
Removes agressive optimizations hard-coded upstream
| -rw-r--r-- | biology/megahit/Makefile | 1 | ||||
| -rw-r--r-- | biology/megahit/files/patch-CMakeLists.txt | 17 |
2 files changed, 18 insertions, 0 deletions
diff --git a/biology/megahit/Makefile b/biology/megahit/Makefile index 30080e9d2564..379440059baa 100644 --- a/biology/megahit/Makefile +++ b/biology/megahit/Makefile @@ -1,6 +1,7 @@ PORTNAME= megahit DISTVERSIONPREFIX= v DISTVERSION= 1.2.9 +PORTREVISION= 1 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/megahit/files/patch-CMakeLists.txt b/biology/megahit/files/patch-CMakeLists.txt new file mode 100644 index 000000000000..d879052c7f02 --- /dev/null +++ b/biology/megahit/files/patch-CMakeLists.txt @@ -0,0 +1,17 @@ +--- CMakeLists.txt.orig 2019-10-15 02:51:03 UTC ++++ CMakeLists.txt +@@ -42,13 +42,12 @@ find_package(OpenMP REQUIRED) + set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}") + set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -DXXH_INLINE_ALL -ftemplate-depth=3000") + set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -Wno-unused-function") +-set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fprefetch-loop-arrays -funroll-loops") + set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -D__XROOT__='\"${CMAKE_SOURCE_DIR}/src\"'") + #set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -D__XFILE__='\"$(subst ${CMAKE_SOURCE_DIR}/,,$(abspath $<))\"'") + + set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${ZLIB_EXE_LINKER_FLAGS} ${OpenMP_EXE_LINKER_FLAGS}") + +-set(CMAKE_CXX_FLAGS_RELEASE "-O3 -DNDEBUG") ++set(CMAKE_CXX_FLAGS_RELEASE "-DNDEBUG") + set(CMAKE_CXX_FLAGS_DEBUG "-g -ggdb -O1 -D_LIBCPP_DEBUG -D_GLIBCXX_DEBUG") + + if (COVERAGE) |