diff options
| author | Jason W. Bacon <jwb@FreeBSD.org> | 2021-07-12 13:16:45 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2021-07-12 13:16:45 +0000 |
| commit | 5fa07128ec66ff71ca0348a324e2777eb00ee89a (patch) | |
| tree | 29ab7717d0ad27453f6eb6eeff13848262b7060b | |
| parent | 9713ff93f26132468714bfba19c8d7f671b8e4cb (diff) | |
| download | ports-5fa07128ec66ff71ca0348a324e2777eb00ee89a.tar.gz ports-5fa07128ec66ff71ca0348a324e2777eb00ee89a.zip | |
htslib: Update to 1.13
Numerous enhancements and bug fixes
Changes: https://github.com/samtools/htslib/releases/tag/1.13
| -rw-r--r-- | biology/htslib/Makefile | 2 | ||||
| -rw-r--r-- | biology/htslib/distinfo | 6 | ||||
| -rw-r--r-- | biology/htslib/files/patch-hts.c | 10 |
3 files changed, 4 insertions, 14 deletions
diff --git a/biology/htslib/Makefile b/biology/htslib/Makefile index 85e509a6435b..d326ae2b0b65 100644 --- a/biology/htslib/Makefile +++ b/biology/htslib/Makefile @@ -1,7 +1,7 @@ # Created by: Reed A. Cartwright <cartwright@asu.edu> PORTNAME= htslib -DISTVERSION= 1.12 +DISTVERSION= 1.13 CATEGORIES= biology devel # Github generated distfiles are incomplete, so use custom tarball MASTER_SITES= https://github.com/samtools/htslib/releases/download/${DISTVERSION}/ diff --git a/biology/htslib/distinfo b/biology/htslib/distinfo index 2bc449b5deb6..dc4bf1b4ea09 100644 --- a/biology/htslib/distinfo +++ b/biology/htslib/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1616112272 -SHA256 (htslib-1.12.tar.bz2) = 2280141b46e953ba4ae01b98335a84f8e6ccbdb6d5cdbab7f70ee4f7e3b6f4ca -SIZE (htslib-1.12.tar.bz2) = 4094458 +TIMESTAMP = 1626039683 +SHA256 (htslib-1.13.tar.bz2) = f2407df9f97f0bb6b07656579e41a1ca5100464067b6b21bf962a2ea4b0efd65 +SIZE (htslib-1.13.tar.bz2) = 4226834 diff --git a/biology/htslib/files/patch-hts.c b/biology/htslib/files/patch-hts.c deleted file mode 100644 index d18904348c86..000000000000 --- a/biology/htslib/files/patch-hts.c +++ /dev/null @@ -1,10 +0,0 @@ ---- hts.c.orig 2020-10-18 00:49:42 UTC -+++ hts.c -@@ -39,6 +39,7 @@ DEALINGS IN THE SOFTWARE. */ - #include <time.h> - #include <sys/stat.h> - #include <assert.h> -+#include <unistd.h> // R_OK - - #include "htslib/hts.h" - #include "htslib/bgzf.h" |