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| author | Yuri Victorovich <yuri@FreeBSD.org> | 2021-10-08 17:08:11 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2021-10-08 17:20:27 +0000 |
| commit | c38052dfd62bdeda93241d0bf88770b8e53a17c5 (patch) | |
| tree | 3e211172948b3fc2c0d14544b9050a043bc77272 | |
| parent | 946903cf7cb28ad3c896314d3eff7999e88d7c3e (diff) | |
| download | ports-c38052dfd62bdeda93241d0bf88770b8e53a17c5.tar.gz ports-c38052dfd62bdeda93241d0bf88770b8e53a17c5.zip | |
biology/libneurosim: New port: Common interfaces for neuronal simulators
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/libneurosim/Makefile | 34 | ||||
| -rw-r--r-- | biology/libneurosim/distinfo | 3 | ||||
| -rw-r--r-- | biology/libneurosim/pkg-descr | 13 | ||||
| -rw-r--r-- | biology/libneurosim/pkg-plist | 13 |
5 files changed, 64 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index e14218f00558..ba430926041c 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -76,6 +76,7 @@ SUBDIR += lamarc SUBDIR += libbigwig SUBDIR += libgtextutils + SUBDIR += libneurosim SUBDIR += libnuml SUBDIR += libsbml SUBDIR += libsedml diff --git a/biology/libneurosim/Makefile b/biology/libneurosim/Makefile new file mode 100644 index 000000000000..9cdeb48e806b --- /dev/null +++ b/biology/libneurosim/Makefile @@ -0,0 +1,34 @@ +PORTNAME= libneurosim +DISTVERSIONPREFIX= v +DISTVERSION= 1.2.0 +CATEGORIES= biology + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Common interfaces for neuronal simulators + +LICENSE= GPLv3 +LICENSE_FILE= ${WRKSRC}/COPYING + +USES= autoreconf gmake libtool +USE_LDCONFIG= yes + +GNU_CONFIGURE= yes + +USE_GITHUB= yes +GH_ACCOUNT= INCF + +INSTALL_TARGET= install-strip + +BINARY_ALIAS= aclocal-1.15=aclocal automake-1.15=automake # workaround for the outdated aclocal-1.15 & automake-1.15 somehow placed into libltdl/Makefile + +OPTIONS_DEFINE= PYTHON +OPTIONS_DEFAULT= PYTHON +OPTIONS_SUB= yes + +PYTHON_CONFIGURE_ON= --with-python=${PYTHON_VER:R} +PYTHON_USES= python:3.6+ + +pre-build: # ignore failure of the first run of the build command that always fails first, see https://github.com/INCF/libneurosim/issues/21 + @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} || ${TRUE} + +.include <bsd.port.mk> diff --git a/biology/libneurosim/distinfo b/biology/libneurosim/distinfo new file mode 100644 index 000000000000..697b456e39a0 --- /dev/null +++ b/biology/libneurosim/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1633636734 +SHA256 (INCF-libneurosim-v1.2.0_GH0.tar.gz) = 372fa0d8fb31950370f1d27bff4865e1200456239f4ea382c267d9a310175f83 +SIZE (INCF-libneurosim-v1.2.0_GH0.tar.gz) = 33695 diff --git a/biology/libneurosim/pkg-descr b/biology/libneurosim/pkg-descr new file mode 100644 index 000000000000..fecded8e27cd --- /dev/null +++ b/biology/libneurosim/pkg-descr @@ -0,0 +1,13 @@ +libneurosim is a general library that provides interfaces and common utility +code for neuronal simulators. + +Currently it provides the ConnectionGenerator interface. + +The ConnectionGenerator API is a standard interface supporting efficient +generation of network connectivity during model setup in neuronal network +simulators. It is intended as an abstraction isolating both sides of the API: +any simulator can use a given connection generator and a given simulator can use +any library providing the ConnectionGenerator interface. It was initially +developed to support the use of libcsa from NEST. + +WWW: https://github.com/INCF/libneurosim diff --git a/biology/libneurosim/pkg-plist b/biology/libneurosim/pkg-plist new file mode 100644 index 000000000000..5da69290ed22 --- /dev/null +++ b/biology/libneurosim/pkg-plist @@ -0,0 +1,13 @@ +include/neurosim/config.h +include/neurosim/connection_generator.h +include/neurosim/connection_generator_V2_0.h +%%PYTHON%%include/neurosim/pyneurosim.h +include/neurosim/version.h +lib/libneurosim.a +lib/libneurosim.so +lib/libneurosim.so.0 +lib/libneurosim.so.0.0.0 +%%PYTHON%%lib/libpy3neurosim.a +%%PYTHON%%lib/libpy3neurosim.so +%%PYTHON%%lib/libpy3neurosim.so.0 +%%PYTHON%%lib/libpy3neurosim.so.0.0.0 |