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* biology/biostar-tools: Add biology/sam2pairwise to run depsJason W. Bacon2021-09-072-3/+4
* biology/sam2pairwise: Show pairwise alignment for each read in a SAM fileJason W. Bacon2021-09-075-0/+67
* biology/emboss: Put emboss-shell in default PATHJason W. Bacon2021-09-064-4/+5
* biology/biostar-tools: Add mafft, clustal-omega, pywgsim depsJason W. Bacon2021-09-062-3/+6
* biology/emboss: Add emboss-shell: Run subshell with proper PATHJason W. Bacon2021-09-067-17/+47
* biology/py-pywgsim: Modified wgsim genomic data simulatorJason W. Bacon2021-09-064-0/+26
* biology/ncbi-cxx-toolkit: Broken on 11Yuri Victorovich2021-09-041-0/+2
* *: Clean up some thingsTobias Kortkamp2021-09-031-3/+2
* biology/peak-classifier: Update to 0.1.1.21Jason W. Bacon2021-09-022-5/+5
* biology/biolibc: Update to 0.2.0.1Jason W. Bacon2021-09-022-4/+5
* biology/mothur: Update 1.46.0 -> 1.46.1Yuri Victorovich2021-09-022-4/+4
* biology/biolibc-tools: High-performance tools based on biolibcJason W. Bacon2021-08-305-0/+45
* biology/pooler: Update to 1.78Jason W. Bacon2021-08-282-5/+5
* biology/peak-classifier: Update to 0.1.1.20Jason W. Bacon2021-08-282-4/+5
* biology/vcf2hap: Update to 0.1.3.12Jason W. Bacon2021-08-282-4/+5
* biology/vcf-split: Update to 0.1.2.14Jason W. Bacon2021-08-282-4/+5
* biology/ad2vcf: Update to 0.1.3.31Jason W. Bacon2021-08-282-4/+5
* biology/biolibc: Update to 0.2.0Jason W. Bacon2021-08-284-22/+553
* biology/fastp: Update to 0.22.0Jason W. Bacon2021-08-262-4/+4
* biology/mothur: Update 1.45.3 -> 1.46.0Yuri Victorovich2021-08-262-11/+10
* biology/ncbi-cxx-toolkit: Update 22.0.0 -> 25.0.0Yuri Victorovich2021-08-252-10/+21
* biology/unikmer: Update 0.18.3 -> 0.18.4Yuri Victorovich2021-08-242-6/+6
* biostar-tools: Update to 1.4.0Jason W. Bacon2021-08-242-2/+6
* biology/bfc: Correct sequencing errors from Illumina sequencing dataJason W. Bacon2021-08-236-0/+76
* biology/flash: Fast Length Adjustment of SHort readsJason W. Bacon2021-08-235-0/+57
* biology/minimap2: Add pkg-plist to repoJason W. Bacon2021-08-221-0/+10
* biology/jellyfish: Update to 2.3.0Jason W. Bacon2021-08-226-58/+4
* biology/minimap2: Update to 2.22Jason W. Bacon2021-08-223-10/+16
* biology/bbmap: Update to 38.92Jason W. Bacon2021-08-223-8/+22
* biology/pooler: Update to 1.77Jason W. Bacon2021-08-212-4/+6
* biology/igv: Broken on 11Yuri Victorovich2021-08-211-0/+2
* biology/abyss: Broken on 11Yuri Victorovich2021-08-211-0/+1
* biology/edlib: Update 1.2.6.20201202 -> 1.2.7Yuri Victorovich2021-08-212-5/+5
* biology/hyphy: Update to 2.4.32Joseph Mingrone2021-08-204-32/+6
* misc/: Update 0.99.6-2 -> 0.991Yuri Victorovich2021-08-181-0/+1
* biology/ngs-sdk: Update 2.11.0-> 2.11.1Yuri Victorovich2021-08-184-29/+10
* biology/py-PySCeS: New port: Python Simulator for Cellular SystemsYuri Victorovich2021-08-174-0/+45
* biology/py-python-libsbml: New port: LibSBML Python APIYuri Victorovich2021-08-175-0/+32
* biology/py-bx-python: Update 0.8.10 -> 0.8.11-6Yuri Victorovich2021-08-172-5/+10
* biology/py-resdk: Update 13.3.0 -> 13.4.0wen heping2021-08-172-5/+5
* biology/sigviewer: New port: Viewing application for biosignalsYuri Victorovich2021-08-174-0/+39
* biology/biosig: Add DISTNAME instead of DISTVERSIONSUFFIXYuri Victorovich2021-08-171-1/+1
* biology/biosig: New port: Library for reading and writing different biosignal...Yuri Victorovich2021-08-178-0/+460
* biology/seqkit: Add 'test' targetYuri Victorovich2021-08-141-0/+4
* biology/unikmer: Add 'test' targetYuri Victorovich2021-08-141-0/+13
* biology/seaview: in preparation to FLTK update, unbreak the portAlexey Dokuchaev2021-08-142-3/+74
* biology/seqan3: Add the 'test' target (currently broken due to lacking clang ...Yuri Victorovich2021-08-131-0/+8
* biostar-tools: Correct category for py-ont-fast5-apiJason W. Bacon2021-08-131-1/+1
* biostar-tools: Add new deps to metaportJason W. Bacon2021-08-132-4/+7
* biology/py-ont-fast5-api: Interface to Oxford Nanopore .fast5 filesJason W. Bacon2021-08-134-0/+55
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