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# Created by: Mauricio Herrera Cuadra <mauricio@arareko.net>
# $FreeBSD$
PORTNAME= bioperl-run
PORTVERSION= 1.6.901
PORTREVISION= 1
CATEGORIES= biology perl5
PKGNAMEPREFIX= p5-
MAINTAINER= perl@FreeBSD.org
COMMENT= Wrapper modules for common bioinformatics tools
LICENSE= ART10 GPLv3
LICENSE_COMB= dual
BUILD_DEPENDS= p5-bioperl>=1.6.0:biology/p5-bioperl \
p5-IPC-Run>=0:devel/p5-IPC-Run \
p5-Algorithm-Diff>=0:devel/p5-Algorithm-Diff \
p5-XML-Twig>=0:textproc/p5-XML-Twig \
p5-File-Sort>=0:misc/p5-File-Sort \
p5-Config-Any>=0:devel/p5-Config-Any
RUN_DEPENDS:= ${BUILD_DEPENDS}
CONFLICTS= p5-bioperl-run-1.[13579]*
USE_GITHUB= yes
GH_ACCOUNT= bioperl
GH_TAGNAME= 96ccd93
USES= perl5 shebangfix
USE_PERL5= modbuild
SHEBANG_FILES= scripts/*
OPTIONS_DEFINE= DOCS
post-build:
(cd ${WRKSRC} && ${PERL} ./Build manifest)
post-install:
.for i in bioperl_application_installer multi_hmmsearch panalysis papplmaker run_neighbor run_protdist
${CP} ${WRKSRC}/scripts/${i}.PLS ${STAGEDIR}${PREFIX}/bin/bp_${i}
.endfor
@${MKDIR} ${STAGEDIR}${DOCSDIR}
.for doc in AUTHORS Changes INSTALL.PROGRAMS README
${INSTALL_DATA} ${WRKSRC}/${doc} ${STAGEDIR}${DOCSDIR}
.endfor
.include <bsd.port.mk>
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