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bin/bp_papplmaker.pl
bin/bp_panalysis.pl
bin/bp_run_neighbor.pl
bin/bp_multi_hmmsearch.pl
bin/bp_bioperl_application_installer.pl
bin/bp_run_protdist.pl
%%DATADIR%%/scripts/bioperl_application_installer.PLS
%%DATADIR%%/scripts/multi_hmmsearch.PLS
%%DATADIR%%/scripts/panalysis.PLS
%%DATADIR%%/scripts/papplmaker.PLS
%%DATADIR%%/scripts/run_neighbor.PLS
%%DATADIR%%/scripts/run_protdist.PLS
@dirrm %%DATADIR%%/scripts
@dirrm %%DATADIR%%
%%PORTDOCS%%%%DOCSDIR%%/AUTHORS
%%PORTDOCS%%%%DOCSDIR%%/Changes
%%PORTDOCS%%%%DOCSDIR%%/INSTALL.PROGRAMS
%%PORTDOCS%%%%DOCSDIR%%/README
%%PORTDOCS%%@dirrm %%DOCSDIR%%/
%%SITE_PERL%%/Bio/Factory/EMBOSS.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/DBA.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Sim4.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Probalign.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/StandAloneFasta.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Amap.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Blat.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Muscle.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Pal2Nal.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Probcons.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Clustalw.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Kalign.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/MAFFT.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/TCoffee.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Lagan.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Proda.pm
%%SITE_PERL%%/Bio/Tools/Run/Alignment/Exonerate.pm
%%SITE_PERL%%/Bio/Tools/Run/Analysis/soap.pm
%%SITE_PERL%%/Bio/Tools/Run/AnalysisFactory/soap.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Hyphy/REL.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Hyphy/Base.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Hyphy/FEL.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Molphy/ProtML.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Njtree/Best.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/PAML/Codeml.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/PAML/Baseml.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/PAML/Evolver.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/PAML/Yn00.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phast/PhastCons.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip/Consense.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip/Base.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/PhyloBase.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Phyml.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/SLR.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/LVB.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Semphy.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Gerp.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/Gumby.pm
%%SITE_PERL%%/Bio/Tools/Run/Phylo/QuickTree.pm
%%SITE_PERL%%/Bio/Tools/Run/EMBOSSacd.pm
%%SITE_PERL%%/Bio/Tools/Run/ERPIN.pm
%%SITE_PERL%%/Bio/Tools/Run/Phrap.pm
%%SITE_PERL%%/Bio/Tools/Run/FootPrinter.pm
%%SITE_PERL%%/Bio/Tools/Run/Match.pm
%%SITE_PERL%%/Bio/Tools/Run/Primate.pm
%%SITE_PERL%%/Bio/Tools/Run/Pseudowise.pm
%%SITE_PERL%%/Bio/Tools/Run/AnalysisFactory.pm
%%SITE_PERL%%/Bio/Tools/Run/Genscan.pm
%%SITE_PERL%%/Bio/Tools/Run/Infernal.pm
%%SITE_PERL%%/Bio/Tools/Run/Simprot.pm
%%SITE_PERL%%/Bio/Tools/Run/MCS.pm
%%SITE_PERL%%/Bio/Tools/Run/Coil.pm
%%SITE_PERL%%/Bio/Tools/Run/Analysis.pm
%%SITE_PERL%%/Bio/Tools/Run/Prints.pm
%%SITE_PERL%%/Bio/Tools/Run/Hmmer.pm
%%SITE_PERL%%/Bio/Tools/Run/Vista.pm
%%SITE_PERL%%/Bio/Tools/Run/TigrAssembler.pm
%%SITE_PERL%%/Bio/Tools/Run/Eponine.pm
%%SITE_PERL%%/Bio/Tools/Run/TribeMCL.pm
%%SITE_PERL%%/Bio/Tools/Run/Promoterwise.pm
%%SITE_PERL%%/Bio/Tools/Run/tRNAscanSE.pm
%%SITE_PERL%%/Bio/Tools/Run/Cap3.pm
%%SITE_PERL%%/Bio/Tools/Run/Glimmer.pm
%%SITE_PERL%%/Bio/Tools/Run/EMBOSSApplication.pm
%%SITE_PERL%%/Bio/Tools/Run/Signalp.pm
%%SITE_PERL%%/Bio/Tools/Run/Meme.pm
%%SITE_PERL%%/Bio/Tools/Run/RNAMotif.pm
%%SITE_PERL%%/Bio/Tools/Run/Seg.pm
%%SITE_PERL%%/Bio/Tools/Run/Genemark.pm
%%SITE_PERL%%/Bio/Tools/Run/Mdust.pm
%%SITE_PERL%%/Bio/Tools/Run/RepeatMasker.pm
%%SITE_PERL%%/Bio/Tools/Run/Genewise.pm
%%SITE_PERL%%/Bio/Tools/Run/Profile.pm
%%SITE_PERL%%/Bio/Tools/Run/Tmhmm.pm
%%SITE_PERL%%/Bio/Tools/Run/Ensembl.pm
%%SITE_PERL%%/Bio/Tools/Run/Primer3.pm
%%SITE_PERL%%/Bio/Installer/EMBOSS.pm
%%SITE_PERL%%/Bio/Installer/Muscle.pm
%%SITE_PERL%%/Bio/Installer/Clustalw.pm
%%SITE_PERL%%/Bio/Installer/SLR.pm
%%SITE_PERL%%/Bio/Installer/Probcons.pm
%%SITE_PERL%%/Bio/Installer/TCoffee.pm
%%SITE_PERL%%/Bio/Installer/Hyphy.pm
%%SITE_PERL%%/Bio/Installer/Generic.pm
%%SITE_PERL%%/Bio/Installer/PAML.pm
@dirrm %%SITE_PERL%%/Bio/Installer
@dirrm %%SITE_PERL%%/Bio/Tools/Run/Analysis
@dirrm %%SITE_PERL%%/Bio/Tools/Run/Alignment
@dirrm %%SITE_PERL%%/Bio/Tools/Run/AnalysisFactory
@dirrm %%SITE_PERL%%/Bio/Tools/Run/Phylo/Hyphy
@dirrm %%SITE_PERL%%/Bio/Tools/Run/Phylo/Molphy
@dirrm %%SITE_PERL%%/Bio/Tools/Run/Phylo/Njtree
@dirrm %%SITE_PERL%%/Bio/Tools/Run/Phylo/PAML
@dirrm %%SITE_PERL%%/Bio/Tools/Run/Phylo/Phast
@dirrm %%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip
@dirrm %%SITE_PERL%%/Bio/Tools/Run/Phylo
@dirrmtry %%SITE_PERL%%/Bio/Tools/Run
@dirrmtry %%SITE_PERL%%/Bio/Tools
@dirrmtry %%SITE_PERL%%/Bio
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