diff options
| author | Thierry Thomas <thierry@FreeBSD.org> | 2007-06-17 21:04:54 +0000 |
|---|---|---|
| committer | Thierry Thomas <thierry@FreeBSD.org> | 2007-06-17 21:04:54 +0000 |
| commit | 8fecd8a363977c7d53fa001250a32ead0aaf736b (patch) | |
| tree | 2fc76790cd3db56aa3f887f1c8ff10a761890516 | |
| parent | 0a7df5e916cf09acca2033a1ddbed3e6f77e1dde (diff) | |
| download | ports-8fecd8a363977c7d53fa001250a32ead0aaf736b.tar.gz ports-8fecd8a363977c7d53fa001250a32ead0aaf736b.zip | |
Code_Saturne is EDF's general purpose computational fluid dynamics
software. Developed since 1997 at EDF R&D, it is based on a co-located
Finite Volume approach that accepts meshes with any type of
cell (tetrahedral, hexahedral, prismatic, pyramidal, polyhedral, ...)
and any type of grid structure (unstructured, blockstructured, hybrid,
conforming or with hanging nodes, ...).
Its basic capabilities enable the handling of either incompressible or
expandable flows with or without heat transfer and turbulence (mixing
length, 2-equation models, v2f, Reynolds stress models, Large Eddy
Simulations, ...).
<http://rd.edf.com/code_saturne/>
Notes
Notes:
svn path=/head/; revision=193734
33 files changed, 1889 insertions, 0 deletions
diff --git a/science/Makefile b/science/Makefile index 6d13e5a72f07..6da4bfb638d0 100644 --- a/science/Makefile +++ b/science/Makefile @@ -9,6 +9,7 @@ SUBDIR += afni SUBDIR += at SUBDIR += bblimage + SUBDIR += bft SUBDIR += bodr SUBDIR += buddy SUBDIR += cdcl @@ -23,6 +24,7 @@ SUBDIR += dcl SUBDIR += devisor SUBDIR += dft++ + SUBDIR += ecs SUBDIR += elmer-eio SUBDIR += elmer-fem SUBDIR += elmer-hutiter @@ -36,6 +38,7 @@ SUBDIR += fasthenry SUBDIR += felt SUBDIR += flounder + SUBDIR += fvm SUBDIR += g3data SUBDIR += gamess SUBDIR += gave @@ -55,6 +58,7 @@ SUBDIR += gwyddion SUBDIR += hdf SUBDIR += hdf5 + SUBDIR += ics SUBDIR += isaac-cfd SUBDIR += kmovisto SUBDIR += kst @@ -75,6 +79,7 @@ SUBDIR += mpb SUBDIR += mpqc SUBDIR += mpqc-mpich + SUBDIR += ncs SUBDIR += netcdf SUBDIR += nifticlib SUBDIR += oases diff --git a/science/bft/Makefile b/science/bft/Makefile new file mode 100644 index 000000000000..f43e2a52055e --- /dev/null +++ b/science/bft/Makefile @@ -0,0 +1,33 @@ +# New ports collection makefile for: bft +# Date created: Sun 1 apr 2007 +# Whom: thierry@pompo.net +# +# $FreeBSD$ +# + +PORTNAME= bft +PORTVERSION= 1.0.3 +CATEGORIES= science parallel +MASTER_SITES= http://www.edf.fr/html/RetD/livraison_saturne_${REL_DATE}/ + +MAINTAINER= thierry@FreeBSD.org +COMMENT= Code_Saturne Base Functions and Types library + +REL_DATE= 070305 + +USE_LDCONFIG= yes +GNU_CONFIGURE= yes +CONFIGURE_TARGET= --build=${MACHINE_ARCH}-portbld-freebsd${OSREL} + +TESTSBIN= bft_test + +pre-configure: + # No useful doc there + ${REINPLACE_CMD} -e 's|tests doc|tests|' ${WRKSRC}/Makefile.in + +regression-test: +.for pg in ${TESTSBIN} + @(cd ${WRKSRC}/tests; ./${pg} arg1 arg2) +.endfor + +.include <bsd.port.mk> diff --git a/science/bft/distinfo b/science/bft/distinfo new file mode 100644 index 000000000000..f75be4816a18 --- /dev/null +++ b/science/bft/distinfo @@ -0,0 +1,3 @@ +MD5 (bft-1.0.3.tar.gz) = 9003c7480df32b8f88fa95ee476244d7 +SHA256 (bft-1.0.3.tar.gz) = 92d96837e920fc4742d1a9058df0fd54c632ae2248304ff2e3976c2e74a754cf +SIZE (bft-1.0.3.tar.gz) = 430826 diff --git a/science/bft/pkg-descr b/science/bft/pkg-descr new file mode 100644 index 000000000000..d9dacf510b08 --- /dev/null +++ b/science/bft/pkg-descr @@ -0,0 +1,5 @@ +BFT stands for Base Functions and Types. +It is destined to be used by scientific codes (CFD) often using +some form of parallelism, especially MPI. + +WWW: http://rd.edf.com/code_saturne/ diff --git a/science/bft/pkg-plist b/science/bft/pkg-plist new file mode 100644 index 000000000000..08eee58989c4 --- /dev/null +++ b/science/bft/pkg-plist @@ -0,0 +1,18 @@ +bin/bft-config +include/bft_backtrace.h +include/bft_config.h +include/bft_config_priv.h +include/bft_error.h +include/bft_file.h +include/bft_fp_trap.h +include/bft_intl.h +include/bft_mem.h +include/bft_mem_usage.h +include/bft_printf.h +include/bft_sys_info.h +include/bft_timer.h +include/bft_version.h +lib/libbft.a +lib/libbft.la +lib/libbft.so +lib/libbft.so.1 diff --git a/science/ecs/Makefile b/science/ecs/Makefile new file mode 100644 index 000000000000..1a0eb03ba6f4 --- /dev/null +++ b/science/ecs/Makefile @@ -0,0 +1,63 @@ +# New ports collection makefile for: ecs +# Date created: Sun 1 apr 2007 +# Whom: thierry@pompo.net +# +# $FreeBSD$ +# + +PORTNAME= ecs +DISTVERSION= 1.3.c +CATEGORIES= science +MASTER_SITES= http://www.edf.fr/html/RetD/livraison_saturne_${REL_DATE}/ + +MAINTAINER= thierry@FreeBSD.org +COMMENT= Code_Saturne Preprocessor + +LIB_DEPENDS= med.2:${PORTSDIR}/french/med \ + bft.1:${PORTSDIR}/science/bft \ + hdf5.0:${PORTSDIR}/science/hdf5 \ + cgns.0:${PORTSDIR}/science/cgnslib + +REL_DATE= 070305 + +GNU_CONFIGURE= yes +CONFIGURE_TARGET= --build=${MACHINE_ARCH}-portbld-freebsd${OSREL} +CONFIGURE_ARGS= --with-bft-prefix=${LOCALBASE} \ + --with-hdf5-prefix=${LOCALBASE} \ + --with-cgns-prefix=${LOCALBASE} \ + --with-med-prefix=${LOCALBASE} \ + --with-metis-prefix=${LOCALBASE} +CONFIGURE_ENV= PTHREAD_LIBS=${PTHREAD_LIBS} + +.if defined(WITHOUT_NLS) +CONFIGURE_ARGS+= --disable-nls +PLIST_SUB+= NLS="@comment " +.else +USE_GETTEXT= yes +USE_ICONV= yes +PLIST_SUB+= NLS="" +.endif + +.if defined(WITH_DEBUG) +CONFIGURE_ARGS+= --enable-debug +.endif + +PORTDOCS= mi_ecs.pdf mu_ecs.pdf + +.include <bsd.port.pre.mk> + +.if exists(${LOCALBASE}/bin/partdmesh) +# The regular metis is there, cannot depends on metis-edf +LIB_DEPENDS+= metis.1:${PORTSDIR}/math/metis +.else +# Prefer metis-edf to avoid conflict with Code_Aster +BUILD_DEPENDS+= ${LOCALBASE}/lib/libmetis.a:${PORTSDIR}/math/metis-edf +.endif + +post-install: +.if !defined(NOPORTDOCS) + ${MKDIR} ${DOCSDIR} + ${INSTALL_DATA} ${PORTDOCS:S|^|${WRKSRC}/doc/|} ${DOCSDIR} +.endif + +.include <bsd.port.post.mk> diff --git a/science/ecs/distinfo b/science/ecs/distinfo new file mode 100644 index 000000000000..a21e1137121e --- /dev/null +++ b/science/ecs/distinfo @@ -0,0 +1,3 @@ +MD5 (ecs-1.3.c.tar.gz) = eadaefbdf2a84a45c85910f5fdb9068a +SHA256 (ecs-1.3.c.tar.gz) = 000b1b70e65c164d190c78d1f7b8f39ea5d3704c181762d911dfed160e92c58b +SIZE (ecs-1.3.c.tar.gz) = 2038856 diff --git a/science/ecs/files/patch-configure b/science/ecs/files/patch-configure new file mode 100644 index 000000000000..974e2cee55de --- /dev/null +++ b/science/ecs/files/patch-configure @@ -0,0 +1,56 @@ +--- configure.orig Thu Feb 15 20:16:38 2007 ++++ configure Mon May 7 11:41:21 2007 +@@ -3771,7 +3771,7 @@ + #------------------------------------------------------------------ + + case "$host_os" in +- linux* | hpux* | irix*) ++ linux* | freebsd* | hpux* | irix*) + CPPFLAGS="${CPPFLAGS} -D_POSIX_SOURCE" + ;; + osf*) +@@ -19595,7 +19595,7 @@ + HDF5_CPPFLAGS="-I$with_hdf5_prefix/include" + HDF5_LDFLAGS="-L$with_hdf5_prefix/lib" + fi +- HDF5_LIBS="-lhdf5" ++ HDF5_LIBS="-lhdf5 $PTHREAD_LIBS" + + CPPFLAGS="${CPPFLAGS} ${HDF5_CPPFLAGS}" + LDFLAGS="${LDFLAGS} ${HDF5_LDFLAGS}" +@@ -19607,7 +19607,7 @@ + echo $ECHO_N "(cached) $ECHO_C" >&6 + else + ac_check_lib_save_LIBS=$LIBS +-LIBS="-lhdf5 $LIBS" ++LIBS="$HDF5_LIBS $LIBS" + cat >conftest.$ac_ext <<_ACEOF + /* confdefs.h. */ + _ACEOF +@@ -19749,7 +19749,7 @@ + elif test "x$with_cgns_prefix" != "x" ; then + CGNS_LDFLAGS="-L$with_cgns_prefix/lib" + fi +- CGNS_LIBS="-lcgns" ++ CGNS_LIBS="-lcgns $HDF5_LIBS" + CPPFLAGS="${CPPFLAGS} ${CGNS_CPPFLAGS}" + LDFLAGS="${LDFLAGS} ${CGNS_LDFLAGS}" + LIBS="${LIBS} ${CGNS_LIBS}" +@@ -19760,7 +19760,7 @@ + echo $ECHO_N "(cached) $ECHO_C" >&6 + else + ac_check_lib_save_LIBS=$LIBS +-LIBS="-lcgns $LIBS" ++LIBS="$CGNS_LIBS $LIBS" + cat >conftest.$ac_ext <<_ACEOF + /* confdefs.h. */ + _ACEOF +@@ -20749,6 +20749,8 @@ + fi + fi; + MED_LIBS="-lmedC -lpthread";; ++ freebsd*) ++ MED_ARCH_NAME=FREEBSD;; + osf*) + if test "x$ints_are_64bit" != "xyes" ; then + MED_ARCH_NAME=OSF1_32 diff --git a/science/ecs/files/patch-src_appli_Makefile.in b/science/ecs/files/patch-src_appli_Makefile.in new file mode 100644 index 000000000000..6028e2692676 --- /dev/null +++ b/science/ecs/files/patch-src_appli_Makefile.in @@ -0,0 +1,11 @@ +--- src/appli/Makefile.in.orig Thu Feb 15 20:16:38 2007 ++++ src/appli/Makefile.in Mon May 7 11:58:10 2007 +@@ -276,7 +276,7 @@ + $(top_builddir)/src/pre-post/libprepostecs.la \ + $(top_builddir)/src/base/libbaseecs.la \ + $(top_builddir)/src/util/libutilecs.la \ +-@HDF5_LDFLAGS@ @HDF5_LIBS@ @MED_LDFLAGS@ @MED_LIBS@ \ ++$(LTLIBINTL) @HDF5_LDFLAGS@ @HDF5_LIBS@ @MED_LDFLAGS@ @MED_LIBS@ \ + @CGNS_LDFLAGS@ @CGNS_LIBS@ \ + @METIS_LDFLAGS@ @METIS_LIBS@ \ + -lm diff --git a/science/ecs/pkg-descr b/science/ecs/pkg-descr new file mode 100644 index 000000000000..cc8026aee0dd --- /dev/null +++ b/science/ecs/pkg-descr @@ -0,0 +1,4 @@ +ECS means "Enveloppe Code Saturne". +This is the preprocessor used by the Code_Saturne and NEPTUNE_CDF codes. + +WWW: http://rd.edf.com/code_saturne/ diff --git a/science/ecs/pkg-plist b/science/ecs/pkg-plist new file mode 100644 index 000000000000..ff4ad28c07d6 --- /dev/null +++ b/science/ecs/pkg-plist @@ -0,0 +1,4 @@ +bin/ecs +bin/ecs-config +bin/perm_nopo +%%NLS%%share/locale/fr/LC_MESSAGES/ecs.mo diff --git a/science/fvm/Makefile b/science/fvm/Makefile new file mode 100644 index 000000000000..997d33eae180 --- /dev/null +++ b/science/fvm/Makefile @@ -0,0 +1,54 @@ +# New ports collection makefile for: fvm +# Date created: Sun 1 apr 2007 +# Whom: thierry@pompo.net +# +# $FreeBSD$ +# + +PORTNAME= fvm +PORTVERSION= 0.6.3 +CATEGORIES= science parallel +MASTER_SITES= http://www.edf.fr/html/RetD/livraison_saturne_${REL_DATE}/ + +MAINTAINER= thierry@FreeBSD.org +COMMENT= Code_Saturne Finite Volume Mesh + +LIB_DEPENDS= med.2:${PORTSDIR}/french/med \ + bft.1:${PORTSDIR}/science/bft \ + hdf5.0:${PORTSDIR}/science/hdf5 \ + cgns.0:${PORTSDIR}/science/cgnslib + +REL_DATE= 070305 + +USE_LDCONFIG= yes +GNU_CONFIGURE= yes +CONFIGURE_TARGET= --build=${MACHINE_ARCH}-portbld-freebsd${OSREL} +CONFIGURE_ARGS= --with-bft-prefix=${LOCALBASE} \ + --with-hdf5-prefix=${LOCALBASE} \ + --with-cgns-prefix=${LOCALBASE} \ + --with-med-prefix=${LOCALBASE} +CONFIGURE_ENV= PTHREAD_LIBS=${PTHREAD_LIBS} + +.if defined(WITH_LAM) +BUILD_DEPENDS+= ${LOCALBASE}/lib/liblam.a:${PORTSDIR}/net/lam +RUN_DEPENDS+= ${LOCALBASE}/bin/lamboot:${PORTSDIR}/net/lam +CONFIGURE_ARGS+= --with-mpi-prefix=${LOCALBASE} +.elif defined(WITH_OPENMPI) +BUILD_DEPENDS+= ${LOCALBASE}/mpi/openmpi/bin/mpicc:${PORTSDIR}/net/openmpi +RUN_DEPENDS+= ${LOCALBASE}/mpi/openmpi/bin/mpirun:${PORTSDIR}/net/openmpi +CONFIGURE_ARGS+= --with-mpi-prefix=${LOCALBASE}/mpi/openmpi +.else +BUILD_DEPENDS+= ${LOCALBASE}/mpich2/bin/mpicc:${PORTSDIR}/net/mpich2 +RUN_DEPENDS+= ${LOCALBASE}/mpich2/bin/mpirun:${PORTSDIR}/net/mpich2 +CONFIGURE_ARGS+= --with-mpi-prefix=${LOCALBASE}/mpich2 +.endif + +.if defined(WITH_DEBUG) +CONFIGURE_ARGS+= --enable-debug +.endif + +pre-configure: + # No useful doc there + ${REINPLACE_CMD} -e 's|tests doc|tests|' ${WRKSRC}/Makefile.in + +.include <bsd.port.mk> diff --git a/science/fvm/distinfo b/science/fvm/distinfo new file mode 100644 index 000000000000..d86bbb5e77da --- /dev/null +++ b/science/fvm/distinfo @@ -0,0 +1,3 @@ +MD5 (fvm-0.6.3.tar.gz) = f02b468bb9677809305d160b41b8f949 +SHA256 (fvm-0.6.3.tar.gz) = 1566ff22213846f24d976ef11a9e1e9aef485f870206656ab301f899bc5bdcbb +SIZE (fvm-0.6.3.tar.gz) = 566676 diff --git a/science/fvm/files/patch-configure b/science/fvm/files/patch-configure new file mode 100644 index 000000000000..758f79ea0227 --- /dev/null +++ b/science/fvm/files/patch-configure @@ -0,0 +1,74 @@ +--- configure.orig Thu Feb 15 18:57:25 2007 ++++ configure Fri May 4 23:03:56 2007 +@@ -19654,7 +19654,7 @@ + HDF5_CPPFLAGS="-I$with_hdf5_prefix/include" + HDF5_LDFLAGS="-L$with_hdf5_prefix/lib" + fi +- HDF5_LIBS="-lhdf5" ++ HDF5_LIBS="-lhdf5 $PTHREAD_LIBS" + + CPPFLAGS="${CPPFLAGS} ${HDF5_CPPFLAGS}" + LDFLAGS="${LDFLAGS} ${HDF5_LDFLAGS}" +@@ -19666,7 +19666,7 @@ + echo $ECHO_N "(cached) $ECHO_C" >&6 + else + ac_check_lib_save_LIBS=$LIBS +-LIBS="-lhdf5 $LIBS" ++LIBS="$HDF5_LIBS $LIBS" + cat >conftest.$ac_ext <<_ACEOF + /* confdefs.h. */ + _ACEOF +@@ -19810,7 +19810,7 @@ + elif test "x$with_cgns_prefix" != "x" ; then + CGNS_LDFLAGS="-L$with_cgns_prefix/lib" + fi +- CGNS_LIBS="-lcgns" ++ CGNS_LIBS="-lcgns $HDF5_LIBS" + CPPFLAGS="${CPPFLAGS} ${CGNS_CPPFLAGS}" + LDFLAGS="${LDFLAGS} ${CGNS_LDFLAGS}" + LIBS="${LIBS} ${CGNS_LIBS}" +@@ -19821,7 +19821,7 @@ + echo $ECHO_N "(cached) $ECHO_C" >&6 + else + ac_check_lib_save_LIBS=$LIBS +-LIBS="-lcgns $LIBS" ++LIBS="$CGNS_LIBS $LIBS" + cat >conftest.$ac_ext <<_ACEOF + /* confdefs.h. */ + _ACEOF +@@ -20810,6 +20810,8 @@ + fi + fi; + MED_LIBS="-lmedC -lpthread";; ++ freebsd*) ++ MED_ARCH_NAME=FREEBSD;; + osf*) + if test "x$ints_are_64bit" != "xyes" ; then + MED_ARCH_NAME=OSF1_32 +@@ -25366,7 +25368,7 @@ + { echo "$as_me:$LINENO: checking for MPI (basic test)" >&5 + echo $ECHO_N "checking for MPI (basic test)... $ECHO_C" >&6; } + if test "$MPI_LIBS" = "" ; then +- MPI_LIBS="-lmpi" ++ MPI_LIBS="-lmpi $PTHREAD_LIBS" + fi + CPPFLAGS="$saved_CPPFLAGS $MPI_CPPFLAGS" + LDFLAGS="$saved_LDFLAGS $MPI_LDFLAGS" +@@ -25422,7 +25424,7 @@ + { echo "$as_me:$LINENO: checking for MPI (mpich test)" >&5 + echo $ECHO_N "checking for MPI (mpich test)... $ECHO_C" >&6; } + # First try (simplest) +- MPI_LIBS="-lmpich" ++ MPI_LIBS="-lmpich $PTHREAD_LIBS" + LIBS="$saved_LIBS $MPI_LIBS" + cat >conftest.$ac_ext <<_ACEOF + /* confdefs.h. */ +@@ -25524,7 +25526,7 @@ + { echo "$as_me:$LINENO: checking for MPI (lam-mpi test)" >&5 + echo $ECHO_N "checking for MPI (lam-mpi test)... $ECHO_C" >&6; } + # First try (without MPI-IO) +- MPI_LIBS="-lmpi -llam -lpthread" ++ MPI_LIBS="-lmpi -llam $PTHREAD_LIBS" + LIBS="$saved_LIBS $MPI_LIBS" + cat >conftest.$ac_ext <<_ACEOF + /* confdefs.h. */ diff --git a/science/fvm/pkg-descr b/science/fvm/pkg-descr new file mode 100644 index 000000000000..6787774c7ab1 --- /dev/null +++ b/science/fvm/pkg-descr @@ -0,0 +1,5 @@ +BFT stands for Finite Volume Mesh. +It is intended to provide finite volume mesh I/O and some other services such +as interpolation, possibly in parallel using MPI. + +WWW: http://rd.edf.com/code_saturne/ diff --git a/science/fvm/pkg-plist b/science/fvm/pkg-plist new file mode 100644 index 000000000000..65dab748c27d --- /dev/null +++ b/science/fvm/pkg-plist @@ -0,0 +1,23 @@ +bin/fvm-config +include/fvm_config.h +include/fvm_config_priv.h +include/fvm_defs.h +include/fvm_interface.h +include/fvm_io_num.h +include/fvm_locator.h +include/fvm_nodal.h +include/fvm_nodal_append.h +include/fvm_nodal_extract.h +include/fvm_nodal_extrude.h +include/fvm_nodal_from_desc.h +include/fvm_nodal_order.h +include/fvm_nodal_project.h +include/fvm_nodal_triangulate.h +include/fvm_order.h +include/fvm_parall.h +include/fvm_triangulate.h +include/fvm_writer.h +lib/libfvm.a +lib/libfvm.la +lib/libfvm.so +lib/libfvm.so.0 diff --git a/science/ics/Makefile b/science/ics/Makefile new file mode 100644 index 000000000000..fa972262e03b --- /dev/null +++ b/science/ics/Makefile @@ -0,0 +1,36 @@ +# New ports collection makefile for: ics +# Date created: Sun 1 apr 2007 +# Whom: thierry@pompo.net +# +# $FreeBSD$ +# + +PORTNAME= ics +PORTVERSION= 1.1.l +CATEGORIES= science +MASTER_SITES= http://www.edf.fr/html/RetD/livraison_saturne_${REL_DATE}/ + +MAINTAINER= thierry@FreeBSD.org +COMMENT= Code_Saturne Graphical User Interface + +LIB_DEPENDS= tix8184:${PORTSDIR}/x11-toolkits/tix +RUN_DEPENDS= ${CS_HOME}/bin/info_cs:${PORTSDIR}/science/ncs \ + ${PYTHON_SITELIBDIR}/_tkinter.so:${PORTSDIR}/x11-toolkits/py-tkinter + +REL_DATE= 070305 + +NO_BUILD= yes +USE_PYTHON= yes + +PATHCS= ${PREFIX}/Saturne +CS_HOME= ${LOCALBASE}/Saturne/Noyau/ncs +ICS_HOME= ${PATHCS}/Interface/ics +PLIST_SUB= ICS=Saturne/Interface/ics + +do-install: + ${MKDIR} ${ICS_HOME} + (cd ${WRKSRC}/ && ${COPYTREE_SHARE} \* ${ICS_HOME}) + @${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py ${ICS_HOME} + @${PYTHON_CMD} -O ${PYTHON_LIBDIR}/compileall.py ${ICS_HOME} + +.include <bsd.port.mk> diff --git a/science/ics/distinfo b/science/ics/distinfo new file mode 100644 index 000000000000..0d1d8727efcd --- /dev/null +++ b/science/ics/distinfo @@ -0,0 +1,3 @@ +MD5 (ics-1.1.l.tar.gz) = 3ffd6220151f26c92fc2e5ef184985ef +SHA256 (ics-1.1.l.tar.gz) = 8b8ada72c99375d674d2b7a0639ca046c8694d3a35b72bb299bfddfcee0cfd13 +SIZE (ics-1.1.l.tar.gz) = 438629 diff --git a/science/ics/pkg-descr b/science/ics/pkg-descr new file mode 100644 index 000000000000..27be71b710a4 --- /dev/null +++ b/science/ics/pkg-descr @@ -0,0 +1,5 @@ +ICS stands for Interface Code Saturne. + +This is the Graphical User Interface of Code_Saturne. + +WWW: http://rd.edf.com/code_saturne/ diff --git a/science/ics/pkg-plist b/science/ics/pkg-plist new file mode 100644 index 000000000000..062bd0864e9c --- /dev/null +++ b/science/ics/pkg-plist @@ -0,0 +1,244 @@ +%%ICS%%/AUTHORS +%%ICS%%/Base/Blt.py +%%ICS%%/Base/Blt.pyc +%%ICS%%/Base/Blt.pyo +%%ICS%%/Base/CommandLine.py +%%ICS%%/Base/CommandLine.pyc +%%ICS%%/Base/CommandLine.pyo +%%ICS%%/Base/Common.py +%%ICS%%/Base/Common.pyc +%%ICS%%/Base/Common.pyo +%%ICS%%/Base/Dialog.py +%%ICS%%/Base/Dialog.pyc +%%ICS%%/Base/Dialog.pyo +%%ICS%%/Base/Main.py +%%ICS%%/Base/Main.pyc +%%ICS%%/Base/Main.pyo +%%ICS%%/Base/TkPage.py +%%ICS%%/Base/TkPage.pyc +%%ICS%%/Base/TkPage.pyo +%%ICS%%/Base/Toolbox.py +%%ICS%%/Base/Toolbox.pyc +%%ICS%%/Base/Toolbox.pyo +%%ICS%%/Base/Tree.py +%%ICS%%/Base/Tree.pyc +%%ICS%%/Base/Tree.pyo +%%ICS%%/Base/WmDefault.py +%%ICS%%/Base/WmDefault.pyc +%%ICS%%/Base/WmDefault.pyo +%%ICS%%/Base/XMLengine.py +%%ICS%%/Base/XMLengine.pyc +%%ICS%%/Base/XMLengine.pyo +%%ICS%%/Base/XMLinitialize.py +%%ICS%%/Base/XMLinitialize.pyc +%%ICS%%/Base/XMLinitialize.pyo +%%ICS%%/Base/XMLmodel.py +%%ICS%%/Base/XMLmodel.pyc +%%ICS%%/Base/XMLmodel.pyo +%%ICS%%/Base/XMLvariables.py +%%ICS%%/Base/XMLvariables.pyc +%%ICS%%/Base/XMLvariables.pyo +%%ICS%%/Base/__init__.py +%%ICS%%/Base/__init__.pyc +%%ICS%%/Base/__init__.pyo +%%ICS%%/Changelog +%%ICS%%/Pages/AnalysisFeatures.py +%%ICS%%/Pages/AnalysisFeatures.pyc +%%ICS%%/Pages/AnalysisFeatures.pyo +%%ICS%%/Pages/BatchRunning.py +%%ICS%%/Pages/BatchRunning.pyc +%%ICS%%/Pages/BatchRunning.pyo +%%ICS%%/Pages/BatchRunningModel.py +%%ICS%%/Pages/BatchRunningModel.pyc +%%ICS%%/Pages/BatchRunningModel.pyo +%%ICS%%/Pages/BodyForces.py +%%ICS%%/Pages/BodyForces.pyc +%%ICS%%/Pages/BodyForces.pyo +%%ICS%%/Pages/BoundConditions.py +%%ICS%%/Pages/BoundConditions.pyc +%%ICS%%/Pages/BoundConditions.pyo +%%ICS%%/Pages/CoalCombustion.py +%%ICS%%/Pages/CoalCombustion.pyc +%%ICS%%/Pages/CoalCombustion.pyo +%%ICS%%/Pages/CoalThermoChemistry.py +%%ICS%%/Pages/CoalThermoChemistry.pyc +%%ICS%%/Pages/CoalThermoChemistry.pyo +%%ICS%%/Pages/CommonCombustion.py +%%ICS%%/Pages/CommonCombustion.pyc +%%ICS%%/Pages/CommonCombustion.pyo +%%ICS%%/Pages/CurrentSpecies.py +%%ICS%%/Pages/CurrentSpecies.pyc +%%ICS%%/Pages/CurrentSpecies.pyo +%%ICS%%/Pages/DefineBoundaryRegions.py 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+%%ICS%%/Pictures/telephone.gif +%%ICS%%/Pictures/tete_de_mort.gif +%%ICS%%/Pictures/tree_green_file.gif +%%ICS%%/Pictures/tree_red_file.gif +%%ICS%%/Pictures/tree_white_file.gif +%%ICS%%/Pictures/uc.gif +%%ICS%%/__init__.py +%%ICS%%/__init__.pyc +%%ICS%%/__init__.pyo +%%ICS%%/ics.py +%%ICS%%/ics.pyc +%%ICS%%/ics.pyo +%%ICS%%/testSuite.py +%%ICS%%/testSuite.pyc +%%ICS%%/testSuite.pyo +%%ICS%%/toolbin/archive +%%ICS%%/toolbin/clean +@dirrm %%ICS%%/toolbin +@dirrm %%ICS%%/Pictures +@dirrm %%ICS%%/Pages +@dirrm %%ICS%%/Base +@dirrm %%ICS%% +@dirrm Saturne/Interface diff --git a/science/ncs/Makefile b/science/ncs/Makefile new file mode 100644 index 000000000000..57f574070bf5 --- /dev/null +++ b/science/ncs/Makefile @@ -0,0 +1,177 @@ +# New ports collection makefile for: ncs +# Date created: Sun 1 apr 2007 +# Whom: thierry@pompo.net +# +# $FreeBSD$ +# + +PORTNAME= ncs +DISTVERSION= 1.3.f +CATEGORIES= science parallel +MASTER_SITES= http://www.edf.fr/html/RetD/livraison_saturne_${REL_DATE}/ + +MAINTAINER= thierry@FreeBSD.org +COMMENT= Code_Saturne Kernel + +LIB_DEPENDS= fvm.0:${PORTSDIR}/science/fvm +RUN_DEPENDS= xmgrace:${PORTSDIR}/math/grace \ + ecs:${PORTSDIR}/science/ecs + +REL_DATE= 070305 + +USE_GNOME= libxml2 +USE_PYTHON= yes +BUILD_WRKSRC= ${WRKSRC}/bin +MAKE_ENV= NOM_ARCH=${OPSYS} CS_HOME=${WRKSRC} CS_MPI_PATH=${MPI_HOME}/bin \ + PTHREAD_LIBS=${PTHREAD_LIBS} TERM=${TERM} \ + MPI_HOME=${MPI_HOME} MPI_LIBS="${MPI_LIBS}" + +WANT_FORTRAN= yes #dummy but future use +BUILD_DEPENDS+= gfortran42:${PORTSDIR}/lang/gcc42 +RUN_DEPENDS+= gfortran42:${PORTSDIR}/lang/gcc42 +FC= gfortran42 +F77= gfortran42 +FORTRANLIBDIR= `${DIRNAME} \\`gfortran42 -print-libgcc-file-name\\`` +FORTRANLIBDIR2= `${DIRNAME} \\`gfortran42 -print-libgcc-file-name\\``/../../../ +MAKE_ENV+= FC="${FC}" F77="${F77}" FFLAGS="${FFLAGS}" + +TERM?= vt100 # Default value needed for tput in jail or tinderbox + +PATHCS= ${PREFIX}/Saturne +CS_HOME= ${PATHCS}/Noyau/ncs +ECS_HOME= ${PATHCS}/Enveloppe/ecs +PLIST_SUB= CS_HOME=Saturne/Noyau/ncs ECS_HOME=Saturne/Enveloppe/ecs + +SUB_FILES= pkg-message +PKGMESSAGE= ${WRKDIR}/pkg-message + +SUB_DIRS= data include src users +BIN_SCRIPTS= autovalid compiler_version cree_sat gracehst grp info_cs \ + lance_install rang_mpi.sh verifmail +BIN_DATAS= Makefile SaturneGUI autovalid.xml cs_profile lance lance.help \ + macros_FreeBSD.mk + +.if defined(WITH_LAM) +MPI_HOME= ${LOCALBASE} +BUILD_DEPENDS+= ${MPI_HOME}/lib/liblam.a:${PORTSDIR}/net/lam +RUN_DEPENDS+= ${MPI_HOME}/bin/lamboot:${PORTSDIR}/net/lam +MPI_LIBS= -lmpi -llam +.elif defined(WITH_OPENMPI) +MPI_HOME= ${LOCALBASE}/mpi/openmpi +BUILD_DEPENDS+= ${MPI_HOME}/bin/mpicc:${PORTSDIR}/net/openmpi +RUN_DEPENDS+= ${MPI_HOME}/bin/mpirun:${PORTSDIR}/net/openmpi +MPI_LIBS= -lmpi -lorte -lopal +.else +MPI_HOME= ${LOCALBASE}/mpich2 +BUILD_DEPENDS+= ${MPI_HOME}/bin/mpicc:${PORTSDIR}/net/mpich2 +RUN_DEPENDS+= ${MPI_HOME}/bin/mpirun:${PORTSDIR}/net/mpich2 +MPI_LIBS= -lmpich +.endif + +.if !defined(NOPORTDOCS) +BUILD_DEPENDS+= pdftex:${PORTSDIR}/print/teTeX-base +DOCS= AUTHORS COMPATIBILITY Changelog TODO +.endif + +.include <bsd.port.pre.mk> + +.if exists(${LOCALBASE}/lib/libatlas_r.so) && !defined(WITH_BLAS) +WITH_ATLAS= yes +.endif +.if defined(WITH_ATLAS) && !defined(WITHOUT_ATLAS) +LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas +BLAS_LIB= -lcblas -lf77blas -latlas -L${FORTRANLIBDIR} -L${FORTRANLIBDIR2} -lgfortranbegin -lgfortran +.elif !defined(WITHOUT_BLAS) +LIB_DEPENDS+= blas.2:${PORTSDIR}/math/blas +BLAS_LIB= -lblas +.endif + +.if exists(${X11BASE}/bin/acroread) +RUN_DEPENDS+= acroread:${PORTSDIR}/print/acroreadwrapper +.else +RUN_DEPENDS+= xpdf:${PORTSDIR}/graphics/xpdf +.endif + +.if exists(${LOCALBASE}/apps/homard/homard) +WITH_HOMARD= yes +.endif +.if defined(WITH_HOMARD) +RUN_DEPENDS+= ${LOCALBASE}/apps/homard/homard:${PORTSDIR}/french/homard +.endif + +pre-everything:: + @${ECHO_MSG} + @${ECHO_MSG} "By default ncs is built with MPICH2, but you can set WITH_LAM or WITH_OPENMPI" + @${ECHO_MSG} "if you prefer." + @${ECHO_MSG} + @${ECHO_MSG} "By default ncs is built with BLAS, unless ATLAS is installed, but you can set" + @${ECHO_MSG} "WITHOUT_BLAS or WITHOUT_ATLAS if you prefer." + @${ECHO_MSG} + +pre-patch: + ${CP} -p ${WRKSRC}/bin/macros_Linux.mk ${WRKSRC}/bin/macros_FreeBSD.mk + +do-configure: + ${REINPLACE_CMD} -e 's|%%PATHCS%%|${PATHCS}|' \ + -e 's|%%LOCALBASE%%|${LOCALBASE}|' \ + -e 's|%%FC%%|${FC}|' \ + -e 's|%%PTHREAD_LIBS%%|${PTHREAD_LIBS}|' \ + -e 's|%%MPI_HOME%%|${MPI_HOME}|' \ + -e 's|%%MPI_LIBS%%|${MPI_LIBS}|' \ + ${BUILD_WRKSRC}/cs_profile + ${REINPLACE_CMD} \ + -e 's|/home/saturne/opt/python/arch/$${NOM_ARCH}/bin/python|${PYTHON_CMD}|' \ + ${BUILD_WRKSRC}/SaturneGUI +.if !defined(WITHOUT_BLAS) && !defined(WITHOUT_ATLAS) + ${REINPLACE_CMD} -e 's|BLAS =0|BLAS =1|' \ + -e 's|BLAS_INC =|BLAS_INC =-I${LOCALBASE}/include|' \ + -e 's|BLAS_LDFLAGS =|BLAS_LDFLAGS =${BLAS_LIB}|' \ + ${BUILD_WRKSRC}/macros_FreeBSD.mk +.endif + +do-build: + (cd ${BUILD_WRKSRC}; ${SETENV} ${MAKE_ENV} ./lance_install) + @${ECHO_MSG} + @${ECHO_MSG} "===> Build terminated." + @${ECHO_MSG} + (cd ${WRKSRC}/arch/${OPSYS}; ${FIND} . -name ".readme*" | ${XARGS} \ + ${GREP} -B 10 '^Stop in ') || ${TRUE} +.if !defined(NOPORTDOCS) + @${ECHO_MSG} + @${ECHO_MSG} "===> Building documentation." + @${ECHO_MSG} + (cd ${BUILD_WRKSRC}; ${SETENV} ${MAKE_ENV} ./lance_install DOC) +.endif + +do-install: + ${FIND} ${WRKSRC}/arch/${OPSYS}/lib -name "libsaturne*" -exec \ + ${INSTALL_DATA} {} ${PREFIX}/lib \; + ${MKDIR} ${CS_HOME}/bin ${CS_HOME}/arch/${OPSYS}/lib ${ECS_HOME}/bin + ${LN} -sf ${PREFIX}/lib/libsaturne*.a ${CS_HOME}/arch/${OPSYS}/lib/ +.for sd in ${SUB_DIRS} + (cd ${WRKSRC}/ && ${COPYTREE_SHARE} ${sd} ${CS_HOME}) +.endfor + ${CHMOD} -R u+w ${CS_HOME}/users + (cd ${BUILD_WRKSRC}/ && ${COPYTREE_SHARE} Autovalidation ${CS_HOME}/bin/) + ${INSTALL_SCRIPT} ${BIN_SCRIPTS:S|^|${BUILD_WRKSRC}/|} ${CS_HOME}/bin/ + ${INSTALL_DATA} ${BIN_DATAS:S|^|${BUILD_WRKSRC}/|} ${CS_HOME}/bin/ + ${CHMOD} u+w ${CS_HOME}/bin/lance + ${LN} -sf ${LOCALBASE}/bin/ecs ${ECS_HOME}/bin/ + @${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py ${CS_HOME}/bin/Autovalidation + @${PYTHON_CMD} -O ${PYTHON_LIBDIR}/compileall.py ${CS_HOME}/bin/Autovalidation +.if !defined(NOPORTDOCS) + ${MKDIR} ${DOCSDIR} ${CS_HOME}/doc/NOYAU/ ${CS_HOME}/doc/UTILISATION/ + ${INSTALL_DATA} ${WRKSRC}/doc/NOYAU/noyau.pdf ${CS_HOME}/doc/NOYAU/ + ${INSTALL_DATA} ${WRKSRC}/doc/UTILISATION/saturne.pdf ${CS_HOME}/doc/UTILISATION/ + ${LN} -sf ${CS_HOME}/doc/NOYAU/noyau.pdf ${CS_HOME}/doc/UTILISATION/saturne.pdf \ + ${DOCSDIR}/ + ${INSTALL_DATA} ${DOCS:S|^|${WRKSRC}/|} ${DOCSDIR} + ${LN} -sf ${LOCALBASE}/share/doc/ecs/ ${ECS_HOME}/doc +.endif + +post-install: + @${ECHO_MSG} + @${CAT} ${PKGMESSAGE} + @${ECHO_MSG} + +.include <bsd.port.post.mk> diff --git a/science/ncs/distinfo b/science/ncs/distinfo new file mode 100644 index 000000000000..5b5c59e2468f --- /dev/null +++ b/science/ncs/distinfo @@ -0,0 +1,3 @@ +MD5 (ncs-1.3.f.tar.gz) = 19d052524c8df37090e1a0553683a152 +SHA256 (ncs-1.3.f.tar.gz) = d7e63c8768bf0b5d35d0c52f0ea084e6f3541f762d2583b6c3d6ca0031886186 +SIZE (ncs-1.3.f.tar.gz) = 5175928 diff --git a/science/ncs/files/patch-bin_Makefile b/science/ncs/files/patch-bin_Makefile new file mode 100644 index 000000000000..9ad60fd75ca6 --- /dev/null +++ b/science/ncs/files/patch-bin_Makefile @@ -0,0 +1,64 @@ +--- bin/Makefile.orig Thu Mar 1 12:23:39 2007 ++++ bin/Makefile Sun Jun 17 10:48:01 2007 +@@ -186,7 +186,6 @@ + + link: + @make privtitre +- @make privconfig + @make privcompil + @make privlink + @make privfin +@@ -287,7 +286,7 @@ + if [ ${BLAS} -eq 1 ] ;\ + then dir_inc_cs="$${dir_inc_cs} $(BLAS_INC)" ;\ + cflags="$${cflags} -D_CS_HAVE_BLAS " ;\ +- fflags="$${fflags} -WF,-D_CS_HAVE_BLAS " ;\ ++ fflags="$${fflags} -D_CS_HAVE_BLAS " ;\ + fi ; \ + if [ ${XML} -eq 1 ] ;\ + then dir_inc_cs="$${dir_inc_cs} $(XML_INC)" ;\ +@@ -881,7 +880,7 @@ + echo "$(BO)$(BLD_CS)/$(NOM_ARCH)/$${module}$(NO)" ;\ + echo ;\ + tput init ;\ +- exit -1 ;\ ++ exit 1 ;\ + fi ;\ + fi ;\ + else module="$(MYMODULE)" ;\ +@@ -901,7 +900,7 @@ + echo "$(BO)$(BLD_CS)/$(NOM_ARCH)/$${module}$(NO)" ;\ + echo ;\ + tput init ;\ +- exit -1 ;\ ++ exit 1 ;\ + fi ;\ + fi ;\ + fi ;\ +@@ -914,7 +913,7 @@ + echo "$(BO) Il faut être dans le repertoire général $(DIR_CS)$(NO)" ;\ + echo ;\ + tput init ;\ +- exit -1 ;\ ++ exit 1 ;\ + fi ;\ + if [ ! "$${modtrav}" = "$${module}" ] ;\ + then echo ;\ +@@ -926,7 +925,7 @@ + fi ;\ + echo ;\ + tput init ;\ +- exit -1 ;\ ++ exit 1 ;\ + fi ;\ + if [ ! "$${opttrav}" = "$(MYOPT)" ] ;\ + then echo ;\ +@@ -940,7 +939,7 @@ + fi ;\ + echo ;\ + tput init ;\ +- exit -1 ;\ ++ exit 1 ;\ + fi ;\ + if [ "$${modtrav}" = "BASE" ] ;\ + then INC_CS="toto" ;\ diff --git a/science/ncs/files/patch-bin_compiler_version b/science/ncs/files/patch-bin_compiler_version new file mode 100644 index 000000000000..101492b8fa40 --- /dev/null +++ b/science/ncs/files/patch-bin_compiler_version @@ -0,0 +1,24 @@ +--- ./bin/compiler_version.orig Thu Mar 1 12:23:39 2007 ++++ ./bin/compiler_version Sun May 6 22:49:29 2007 +@@ -132,8 +132,8 @@ + # sur hp, par exemple f90 +version n'en cree pas) + + echo ' ' >> ${compillog} +- if [ -f cs12.exe ] ; then +- ./cs12.exe >> ${compillog} 2>&1 ++ if [ -f cs13.exe ] ; then ++ ./cs13.exe >> ${compillog} 2>&1 + else + echo ' Pas d executable test FORTRAN ' >> ${compillog} + fi +@@ -181,8 +181,8 @@ + # Execution + + echo ' ' >> ${compillog} +- if [ -f cs12.exe ] ; then +- ./cs12.exe >> ${compillog} 2>&1 ++ if [ -f cs13.exe ] ; then ++ ./cs13.exe >> ${compillog} 2>&1 + echo ' ' >> ${compillog} + else + echo ' Pas d executable test C ' >> ${compillog} diff --git a/science/ncs/files/patch-bin_cree_sat b/science/ncs/files/patch-bin_cree_sat new file mode 100644 index 000000000000..80c11a68fc8d --- /dev/null +++ b/science/ncs/files/patch-bin_cree_sat @@ -0,0 +1,37 @@ +--- bin/cree_sat.orig Thu Mar 1 12:23:39 2007 ++++ bin/cree_sat Mon May 7 23:56:27 2007 +@@ -156,12 +156,12 @@ + thch=THCH + mkdir ${CAS}/DATA/$thch + for var in dp_C3P dp_C3PSJ dp_ELE dp_FCP ; do +- cp $CS_HOME/data/thch/$var $CAS/DATA/$thch/. ++ cp -f $CS_HOME/data/thch/$var $CAS/DATA/$thch/. + done + + gui=SaturneGUI + if [ "$IHM" = "ihm" ] ; then +- cp $SCRIPT_HOME/$gui ${CAS}/DATA/. ++ cp -f $SCRIPT_HOME/$gui ${CAS}/DATA/. + sed "s/NOMCSGUIHOME/$CSGUIHOMEBCKSLH/g" $CAS/DATA/$gui >cas.tmp + mv -f cas.tmp $CAS/DATA/$gui + chmod +x $CAS/DATA/$gui +@@ -169,7 +169,7 @@ + + # recopie des src utilisateur et masquage des repertoires CVS + users=USERS +- cp -r $CS_HOME/users $CAS/FORT/$users ++ cp -Rf $CS_HOME/users $CAS/FORT/$users + listedircvs=`find $CAS/FORT/$users -name CVS -print` + for dir in $listedircvs ; do + mv $dir `dirname ${dir}`/.CVS +@@ -178,8 +178,8 @@ + # sur cluster, le nom est limite a 15 caracteres + NOMETCAS=`echo ${etude}${cas}|cut -c1-15` + +- cp $SCRIPT_HOME/lance $CAS/SCRIPTS +- cp $SCRIPT_HOME/lance.help $CAS/SCRIPTS ++ cp -f $SCRIPT_HOME/lance $CAS/SCRIPTS ++ cp -f $SCRIPT_HOME/lance.help $CAS/SCRIPTS + FICREPBASECASBKSLH=$CAS/SCRIPTS/.repbasecasbkslh + echo $REPBASECAS | sed -e "s/\//\\\\\//g" > $FICREPBASECASBKSLH + REPBASECASBCKSLH=`cat $FICREPBASECASBKSLH` diff --git a/science/ncs/files/patch-bin_cs_profile b/science/ncs/files/patch-bin_cs_profile new file mode 100644 index 000000000000..aae5092eeda6 --- /dev/null +++ b/science/ncs/files/patch-bin_cs_profile @@ -0,0 +1,61 @@ +--- bin/cs_profile.orig Thu Mar 1 12:23:39 2007 ++++ bin/cs_profile Tue May 8 15:34:20 2007 +@@ -48,18 +48,33 @@ + + if [ "$NOM_ARCH" = "OSF1" -o "$NOM_ARCH" = "Linux_CCRT" ] ; then + PATHCS=/home/saturne/Saturne +- elif [ "$NOM_ARCH" = "Blue_Gene_L" ] ; then ++ elif [ "$NOM_ARCH" = "FreeBSD" ] ; then ++ PATHCS=%%LOCALBASE%%/Saturne ++ elif [ "$NOM_ARCH" = "Blue_Gene_L" ] ; then + PATHCS=/gpfs2/home/saturne + else + PATHCS=/home/saturne + fi +- CS_HOME=${PATHCS}/Noyau/ncs-1.3.f +- ECS_HOME=${PATHCS}/Enveloppe/ecs-1.3.c +- CSGUI_HOME=${PATHCS}/Interface/ics-1.1.l +- SYRCS_HOME=${PATHCS}/opt/syr_cs-2.0.1 ++ if [ "$NOM_ARCH" = "FreeBSD" ] ; then ++ CS_HOME=${PATHCS}/Noyau/ncs ++ ECS_HOME=${PATHCS}/Enveloppe/ecs ++ CSGUI_HOME=${PATHCS}/Interface/ics ++ SYRCS_HOME=${PATHCS}/opt/syr_cs ++# Variables specifiques a passer au Makefile FreeBSD par lance ++ LOCALBASE=%%LOCALBASE%% ; export LOCALBASE ++ FC=%%FC%% ; export FC ++ PTHREAD_LIBS=%%PTHREAD_LIBS%% ; export PTHREAD_LIBS ++ else ++ CS_HOME=${PATHCS}/Noyau/ncs-1.3.f ++ ECS_HOME=${PATHCS}/Enveloppe/ecs-1.3.c ++ CSGUI_HOME=${PATHCS}/Interface/ics-1.1.l ++ SYRCS_HOME=${PATHCS}/opt/syr_cs-2.0.1 ++ fi + # + if [ "$NOM_ARCH" = "Linux" -a -d /home/prevalcs/HOMARD ] ; then + CSHOMARD_HOME=/home/prevalcs/HOMARD ++ elif [ "$NOM_ARCH" = "FreeBSD" ] ; then ++ CSHOMARD_HOME=%%LOCALBASE%%/apps/homard + else + CSHOMARD_HOME= + fi +@@ -70,7 +85,7 @@ + # Librairies pour l'interface + if [ "$NOM_ARCH" = "OSF1" -o "$NOM_ARCH" = "Linux_CCRT" ] ; then + LD_LIBRARY_PATH=.:/home/saturne/Saturne/opt/tcl8.3/arch/$NOM_ARCH/lib:/home/saturne/Saturne/opt/libxml2-2.6.19/arch/$NOM_ARCH/lib:$LD_LIBRARY_PATH +- else ++ elif [ "$NOM_ARCH" != "FreeBSD" ] ; then + LD_LIBRARY_PATH=.:/home/saturne/opt/tcl8.3/arch/$NOM_ARCH/lib:/home/saturne/opt/libxml2-2.6.19/arch/$NOM_ARCH/lib:$LD_LIBRARY_PATH + fi + +@@ -83,6 +98,10 @@ + CS_MPI_PATH=/home/saturne/opt/openmpi-1.1.1/arch/Linux/bin + elif [ "$NOM_ARCH" = "Linux_Ch" ] ; then + CS_MPI_PATH=/usr/local/mpichgm-1.2.6.14b-64b/bin ++ elif [ "$NOM_ARCH" = "FreeBSD" ] ; then ++ MPI_HOME=%%MPI_HOME%% ; export MPI_HOME ++ MPI_LIBS=%%MPI_LIBS%% ; export MPI_LIBS ++ CS_MPI_PATH=${MPI_HOME}/bin + else + CS_MPI_PATH= + fi diff --git a/science/ncs/files/patch-bin_gracehst b/science/ncs/files/patch-bin_gracehst new file mode 100644 index 000000000000..40d165d4d611 --- /dev/null +++ b/science/ncs/files/patch-bin_gracehst @@ -0,0 +1,17 @@ +--- bin/gracehst.orig Thu Mar 1 12:23:39 2007 ++++ bin/gracehst Mon May 7 14:16:22 2007 +@@ -1,4 +1,4 @@ +-#!/bin/ksh ++#! /bin/sh + #============================================================================ + # + # Code_Saturne version 1.3 +@@ -30,7 +30,7 @@ + # + #============================================================================ + # +-if [ "$1" = "-h" -o "$1" = "-h" -o "$1" = "-h" ] ; then ++if [ "$1" = "-h" -o "$1" = "-help" -o "$#" = "0" ] ; then + echo ' ' + echo ' gracehst: appel de grace -nxy sur un fichier historique ' + echo ' de Code_Saturne en eliminant la premiere colonne. ' diff --git a/science/ncs/files/patch-bin_grp b/science/ncs/files/patch-bin_grp new file mode 100644 index 000000000000..85371f4f3dc0 --- /dev/null +++ b/science/ncs/files/patch-bin_grp @@ -0,0 +1,8 @@ +--- bin/grp.orig Thu Mar 1 12:23:39 2007 ++++ bin/grp Mon May 7 14:08:44 2007 +@@ -1,4 +1,4 @@ +-#!/bin/ksh ++#!/bin/sh + #============================================================================ + # + # Code_Saturne version 1.3 diff --git a/science/ncs/files/patch-bin_macros_FreeBSD.mk b/science/ncs/files/patch-bin_macros_FreeBSD.mk new file mode 100644 index 000000000000..e193b979e480 --- /dev/null +++ b/science/ncs/files/patch-bin_macros_FreeBSD.mk @@ -0,0 +1,146 @@ +--- bin/macros_FreeBSD.mk.orig Thu Mar 1 12:23:39 2007 ++++ bin/macros_FreeBSD.mk Tue May 8 15:06:34 2007 +@@ -1,3 +1,4 @@ ++# $FreeBSD$ + #============================================================================ + # + # Code_Saturne version 1.3 +@@ -29,13 +30,13 @@ + # + #============================================================================ + # +-# Macros du Makefile Code_Saturne pour Linux +-############################################ ++# Macros du Makefile Code_Saturne pour FreeBSD ++############################################## + # + # Macro pour BFT + #--------------- + +-BFT_HOME =/home/saturne/opt/bft-1.0.3/arch/Linux ++BFT_HOME =${LOCALBASE} + + BFT_INC =-I$(BFT_HOME)/include + BFT_LDFLAGS =-L$(BFT_HOME)/lib -lbft +@@ -43,7 +44,7 @@ + # Macro pour FVM + #--------------- + +-FVM_HOME =/home/saturne/opt/fvm-0.6.3/arch/Linux ++FVM_HOME =${LOCALBASE} + + FVM_INC =-I$(FVM_HOME)/include + FVM_LDFLAGS =-L$(FVM_HOME)/lib -lfvm +@@ -57,9 +58,8 @@ + MPE_COMM =1 + + # Pour Open MPI sur saturne +-MPI_HOME =/home/saturne/opt/openmpi-1.1.1/arch/Linux +-MPI_INC =-isystem$(MPI_HOME)/include +-MPI_LIB =-pthread -L$(MPI_HOME)/lib -lmpi -lorte -lopal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl ++MPI_INC =-I$(MPI_HOME)/include ++MPI_LIB =-L$(MPI_HOME)/lib ${MPI_LIBS} $(PTHREAD_LIBS) + + + # Macro pour Sockets +@@ -76,10 +76,10 @@ + # Option XML + XML =1 + +-XML_HOME = /home/saturne/opt/libxml2-2.6.19 ++XML_HOME =${LOCALBASE} + + XML_INC =-I$(XML_HOME)/include/libxml2 +-XML_LIB =-L$(XML_HOME)/arch/Linux/lib -lxml2 ++XML_LIB =-L$(XML_HOME)/lib -lxml2 + + + # Macro pour BLAS +@@ -100,36 +100,36 @@ + # Compilateur C natif + #-------------------- + +-CCOMP = /home/saturne/opt/gcc-4.1.1/arch/Linux/bin/gcc ++CCOMP = $(CC) + + CCOMPFLAGSDEF = -std=c99 -funsigned-char -pedantic -W -Wall -Wshadow \ + -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings \ + -Wstrict-prototypes -Wmissing-prototypes \ +- -Wmissing-declarations -Wnested-externs -Wno-uninitialized ++ -Wmissing-declarations -Wnested-externs -Wno-uninitialized + +-CCOMPFLAGS = $(CCOMPFLAGSDEF) -O -Wno-unused +-CCOMPFLAGSOPTPART1 = $(CCOMPFLAGSDEF) -O +-CCOMPFLAGSOPTPART2 = $(CCOMPFLAGSDEF) -O +-CCOMPFLAGSOPTPART3 = $(CCOMPFLAGSDEF) -O +-CCOMPFLAGSLO = $(CCOMPFLAGSDEF) -O0 +-CCOMPFLAGSDBG = $(CCOMPFLAGSDEF) -g3 ++CCOMPFLAGS = $(CCOMPFLAGSDEF) $(CFLAGS) -Wno-unused ++CCOMPFLAGSOPTPART1 = $(CCOMPFLAGSDEF) $(CFLAGS) ++CCOMPFLAGSOPTPART2 = $(CCOMPFLAGSDEF) $(CFLAGS) ++CCOMPFLAGSOPTPART3 = $(CCOMPFLAGSDEF) $(CFLAGS) ++CCOMPFLAGSLO = $(CCOMPFLAGSDEF) -O0 ++CCOMPFLAGSDBG = $(CCOMPFLAGSDEF) -g + CCOMPFLAGSPROF = -pg +-CCOMPFLAGSVERS = -v ++CCOMPFLAGSVERS = -v + + + # Compilateur FORTRAN + #-------------------- + # Profiling gprof : -pg -a + +-FTNCOMP = /home/saturne/opt/gcc-4.1.1/arch/Linux/bin/gfortran ++FTNCOMP = $(FC) + + FTNCOMPFLAGSDEF = -I. + +-FTNCOMPFLAGS = $(FTNCOMPFLAGSDEF) -O1 +-FTNCOMPFLAGSOPTPART1 = $(FTNCOMPFLAGSDEF) -O2 +-FTNCOMPFLAGSOPTPART2 = $(FTNCOMPFLAGSDEF) -O6 +-FTNCOMPFLAGSOPTPART3 = $(FTNCOMPFLAGSDEF) -O0 +-FTNCOMPFLAGSLO = $(FTNCOMPFLAGSDEF) -O0 ++FTNCOMPFLAGS = $(FTNCOMPFLAGSDEF) $(FFLAGS) ++FTNCOMPFLAGSOPTPART1 = $(FTNCOMPFLAGSDEF) $(FFLAGS) ++FTNCOMPFLAGSOPTPART2 = $(FTNCOMPFLAGSDEF) $(FFLAGS) ++FTNCOMPFLAGSOPTPART3 = $(FTNCOMPFLAGSDEF) $(FFLAGS) ++FTNCOMPFLAGSLO = $(FTNCOMPFLAGSDEF) $(FFLAGS) + FTNCOMPFLAGSDBG = $(FTNCOMPFLAGSDEF) -g + FTNCOMPFLAGSPROF = -pg + FTNCOMPFLAGSVERS = -v +@@ -140,13 +140,13 @@ + + # Linker + +-LDEDL = /home/saturne/opt/gcc-4.1.1/arch/Linux/bin/gfortran +-LDEDLFLAGS = -O +-LDEDLFLAGSLO = -O0 ++LDEDL = $(FC) ++LDEDLFLAGS = $(LDFLAGS) ++LDEDLFLAGSLO = $(LDFLAGS) + LDEDLFLAGSDBG = -g + LDEDLFLAGSPROF = -pg + LDEDLFLAGSVERS = -v +-LDEDLRPATH = -rdynamic -Wl,-rpath -Wl,/home/saturne/opt/gcc-4.1.1/arch/Linux/lib: ++LDEDLRPATH = -rdynamic -Wl,-rpath -Wl, + + + # Positionnement des variables pour le pre-processeur +@@ -162,7 +162,7 @@ + + # Librairies de base toujours prises en compte + +-LIBBASIC = $(BFT_LDFLAGS) $(FVM_LDFLAGS) -lm -lpthread ++LIBBASIC = $(BFT_LDFLAGS) $(FVM_LDFLAGS) -lm $(PTHREAD_LIBS) + + # Librairies en mode sans option + +@@ -178,7 +178,7 @@ + + # Librairie en mode ElectricFence (malloc debugger) + +-LIBEF =-L/home/saturne/opt/efence-2.1.14/arch/Linux/lib -lefence ++LIBEF =-L${LOCALBASE}/lib -lefence + + # Liste eventuelle des fichiers a compiler avec des options particulieres + #------------------------------------------------------------------------ diff --git a/science/ncs/files/patch-src_base_1_gradco.F b/science/ncs/files/patch-src_base_1_gradco.F new file mode 100644 index 000000000000..046e3e9aa875 --- /dev/null +++ b/science/ncs/files/patch-src_base_1_gradco.F @@ -0,0 +1,11 @@ +--- src/base_1/gradco.F.orig Thu Mar 1 12:23:42 2007 ++++ src/base_1/gradco.F Sun Jun 17 15:01:40 2007 +@@ -319,7 +319,7 @@ + RKGKM1 = RKGK + C + #if defined(_CS_HAVE_BLAS) +- CALL DZAXPY(NCEL,RGSRG,DK,UN,GK,UN,DK,UN) ++ CALL CAXPY(NCEL,RGSRG,DK,UN,GK,UN,DK,UN) + #else + DO IEL=1,NCEL + DK(IEL) = GK(IEL) +RGSRG*DK(IEL) diff --git a/science/ncs/files/pkg-message.in b/science/ncs/files/pkg-message.in new file mode 100644 index 000000000000..5de7a18d8b27 --- /dev/null +++ b/science/ncs/files/pkg-message.in @@ -0,0 +1,15 @@ +=============================================================================== +The current version of Code_Saturne is located in the directory +%%PREFIX%%/Saturne/Noyau/ncs + +In order to use Code Saturne, every user must add the following line in their +file ".profile": + +. %%PREFIX%%/Saturne/Noyau/ncs/bin/cs_profile + +For more information refer to the Code_Saturne documentation, available through +the "info_cs" command. + +The Graphical User Interface must be installed separately; it is available as +a FreeBSD port: science/ics. +=============================================================================== diff --git a/science/ncs/pkg-descr b/science/ncs/pkg-descr new file mode 100644 index 000000000000..c49d204ca46c --- /dev/null +++ b/science/ncs/pkg-descr @@ -0,0 +1,19 @@ +Code Saturne is a system designed to solve the Navier-Stokes equations in the +cases of 2D, 2D axisymmetric or 3D flows. Its main module is designed for the +simulation of flows which may be steady or unsteady, laminar or turbulent, +incompressible or potentially dilatable, isothermal or not. +Scalars and turbulent fluctuations of scalars can be taken into account. The +code includes specific modules, referred to as "specific physics", for the +treatment of lagrangian particle tracking, semi-transparent radiative transfer, +gas combustion, pulverised coal combustion, electricity effects (Joule effect +and electric arcs) and compressible flows. The code also includes an engineering +module, Matisse, for the simulation of nuclear waste surface storage. + +Code_Saturne relies on a finite volume discretisation and allows the use of +various mesh types which may be hybrid (containing several kinds of elements) +and may have structural non-conformities (hanging nodes). + +NCS means "Noyau Code Saturne", i.e. "Code Saturne Kernel". This is the +numerical solver. + +WWW: http://rd.edf.com/code_saturne/ diff --git a/science/ncs/pkg-plist b/science/ncs/pkg-plist new file mode 100644 index 000000000000..1eaaefce4db3 --- /dev/null +++ b/science/ncs/pkg-plist @@ -0,0 +1,655 @@ +%%ECS_HOME%%/bin/ecs +%%ECS_HOME%%/doc +%%CS_HOME%%/arch/FreeBSD/lib/libsaturneBASE.a +%%CS_HOME%%/arch/FreeBSD/lib/libsaturneCFBL.a +%%CS_HOME%%/arch/FreeBSD/lib/libsaturneCOGZ.a +%%CS_HOME%%/arch/FreeBSD/lib/libsaturneCPLV.a +%%CS_HOME%%/arch/FreeBSD/lib/libsaturneELEC.a +%%CS_HOME%%/arch/FreeBSD/lib/libsaturneLAGR.a +%%CS_HOME%%/arch/FreeBSD/lib/libsaturneMATI.a +%%CS_HOME%%/arch/FreeBSD/lib/libsaturneRAYT.a +%%CS_HOME%%/bin/Autovalidation/Case.py +%%CS_HOME%%/bin/Autovalidation/Case.pyc +%%CS_HOME%%/bin/Autovalidation/Case.pyo +%%CS_HOME%%/bin/Autovalidation/Chrono.py +%%CS_HOME%%/bin/Autovalidation/Chrono.pyc +%%CS_HOME%%/bin/Autovalidation/Chrono.pyo +%%CS_HOME%%/bin/Autovalidation/CommandLine.py +%%CS_HOME%%/bin/Autovalidation/CommandLine.pyc +%%CS_HOME%%/bin/Autovalidation/CommandLine.pyo +%%CS_HOME%%/bin/Autovalidation/Common.py +%%CS_HOME%%/bin/Autovalidation/Common.pyc +%%CS_HOME%%/bin/Autovalidation/Common.pyo +%%CS_HOME%%/bin/Autovalidation/Listing.py +%%CS_HOME%%/bin/Autovalidation/Listing.pyc +%%CS_HOME%%/bin/Autovalidation/Listing.pyo +%%CS_HOME%%/bin/Autovalidation/Parser.py +%%CS_HOME%%/bin/Autovalidation/Parser.pyc +%%CS_HOME%%/bin/Autovalidation/Parser.pyo +%%CS_HOME%%/bin/Autovalidation/Study.py +%%CS_HOME%%/bin/Autovalidation/Study.pyc +%%CS_HOME%%/bin/Autovalidation/Study.pyo +%%CS_HOME%%/bin/Autovalidation/__init__.py +%%CS_HOME%%/bin/Autovalidation/__init__.pyc +%%CS_HOME%%/bin/Autovalidation/__init__.pyo +%%CS_HOME%%/bin/Makefile +%%CS_HOME%%/bin/SaturneGUI +%%CS_HOME%%/bin/autovalid +%%CS_HOME%%/bin/autovalid.xml +%%CS_HOME%%/bin/compiler_version +%%CS_HOME%%/bin/cree_sat +%%CS_HOME%%/bin/cs_profile +%%CS_HOME%%/bin/gracehst +%%CS_HOME%%/bin/grp +%%CS_HOME%%/bin/info_cs +%%CS_HOME%%/bin/lance +%%CS_HOME%%/bin/lance.help +%%CS_HOME%%/bin/lance_install +%%CS_HOME%%/bin/macros_FreeBSD.mk +%%CS_HOME%%/bin/rang_mpi.sh +%%CS_HOME%%/bin/verifmail +%%CS_HOME%%/data/mati/emm.dat +%%CS_HOME%%/data/mati/emm.geom +%%CS_HOME%%/data/mati/vault.dat +%%CS_HOME%%/data/mati/vault.geom +%%CS_HOME%%/data/thch/JANAF +%%CS_HOME%%/data/thch/dp_C3P +%%CS_HOME%%/data/thch/dp_C3PSJ +%%CS_HOME%%/data/thch/dp_C4P +%%CS_HOME%%/data/thch/dp_ELE +%%CS_HOME%%/data/thch/dp_FCP +%%CS_HOME%%/data/thch/dp_transfo +%%PORTDOCS%%%%CS_HOME%%/doc/NOYAU/noyau.pdf +%%PORTDOCS%%%%CS_HOME%%/doc/UTILISATION/saturne.pdf +%%CS_HOME%%/include/base/albase.h +%%CS_HOME%%/include/base/alstru.h +%%CS_HOME%%/include/base/cs_ale.h +%%CS_HOME%%/include/base/cs_base.h +%%CS_HOME%%/include/base/cs_comm.h +%%CS_HOME%%/include/base/cs_couplage.h +%%CS_HOME%%/include/base/cs_gui.h +%%CS_HOME%%/include/base/cs_gui_matisse.h +%%CS_HOME%%/include/base/cs_gui_radiative_transfer.h +%%CS_HOME%%/include/base/cs_gui_util.h +%%CS_HOME%%/include/base/cs_maillage.h +%%CS_HOME%%/include/base/cs_maillage_connect.h +%%CS_HOME%%/include/base/cs_maillage_grd.h +%%CS_HOME%%/include/base/cs_maillage_select.h +%%CS_HOME%%/include/base/cs_maillage_solcom.h +%%CS_HOME%%/include/base/cs_mesh_quality.h +%%CS_HOME%%/include/base/cs_messages_ecs.h +%%CS_HOME%%/include/base/cs_msg.h +%%CS_HOME%%/include/base/cs_opts.h +%%CS_HOME%%/include/base/cs_parallel.h +%%CS_HOME%%/include/base/cs_perio.h +%%CS_HOME%%/include/base/cs_post.h +%%CS_HOME%%/include/base/cs_suite.h +%%CS_HOME%%/include/base/cs_syr_coupling.h +%%CS_HOME%%/include/base/cs_syr_messages.h +%%CS_HOME%%/include/base/cs_tpar1d.h +%%CS_HOME%%/include/base/cs_ventil.h +%%CS_HOME%%/include/base/cs_voiset.h +%%CS_HOME%%/include/base/cstnum.h +%%CS_HOME%%/include/base/cstphy.h +%%CS_HOME%%/include/base/dimens.h +%%CS_HOME%%/include/base/dimfbr.h +%%CS_HOME%%/include/base/entsor.h +%%CS_HOME%%/include/base/ihmpre.h 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