- Update to 0.1.24

PR:		132527
Submitted by:	Wen Heping <wenheping@gmail.com>
Approved by:	maintainer

5 files changed, 575 insertions, 490 deletions

diff --git a/biology/emboss/Makefile b/biology/emboss/Makefile
index 7898e3dc3575..3ee0b3f99814 100644
--- a/biology/emboss/Makefile
+++ b/biology/emboss/Makefile
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	emboss
-PORTVERSION=	5.0.0
+PORTVERSION=	6.0.1
 RELEASE=	${PORTNAME:U}-${PORTVERSION}
 CATEGORIES=	biology
 MASTER_SITES=	ftp://emboss.open-bio.org/pub/EMBOSS/ \
diff --git a/biology/emboss/distinfo b/biology/emboss/distinfo
index d5738dcba86b..760dab2e11e9 100644
--- a/biology/emboss/distinfo
+++ b/biology/emboss/distinfo
@@ -1,3 +1,3 @@
-MD5 (emboss/EMBOSS-5.0.0.tar.gz) = be4c895220ad34afd65d450ba7d8e34b
-SHA256 (emboss/EMBOSS-5.0.0.tar.gz) = 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae
-SIZE (emboss/EMBOSS-5.0.0.tar.gz) = 20666560
+MD5 (emboss/EMBOSS-6.0.1.tar.gz) = 2182b148dace6bea403deed8facae40d
+SHA256 (emboss/EMBOSS-6.0.1.tar.gz) = 3e352902aa9dab88bf486457ff23794f19398dfc6b550c4bf175dfcad34c233d
+SIZE (emboss/EMBOSS-6.0.1.tar.gz) = 20204153
diff --git a/biology/emboss/pkg-plist b/biology/emboss/pkg-plist
index 6e48cfe6e406..bc0bb59e818d 100644
--- a/biology/emboss/pkg-plist
+++ b/biology/emboss/pkg-plist
@@ -5,6 +5,8 @@ bin/acdpretty
 bin/acdtable
 bin/acdtrace
 bin/acdvalid
+bin/aligncopy
+bin/aligncopypair
 bin/antigenic
 bin/backtranambig
 bin/backtranseq
@@ -22,6 +24,7 @@ bin/codcopy
 bin/coderet
 bin/compseq
 bin/cons
+bin/consambig
 bin/cpgplot
 bin/cpgreport
 bin/cusp
@@ -36,6 +39,7 @@ bin/dbxfasta
 bin/dbxflat
 bin/dbxgcg
 bin/degapseq
+bin/density
 bin/descseq
 bin/diffseq
 bin/digest
@@ -59,6 +63,8 @@ bin/etandem
 bin/extractalign
 bin/extractfeat
 bin/extractseq
+bin/featcopy
+bin/featreport
 bin/findkm
 bin/freak
 bin/fuzznuc
@@ -71,14 +77,20 @@ bin/helixturnhelix
 bin/hmoment
 bin/iep
 bin/infoalign
+bin/infobase
+bin/inforesidue
 bin/infoseq
 bin/isochore
+bin/jaspextract
+bin/jaspscan
 bin/jembossctl
 bin/lindna
 bin/listor
 bin/makenucseq
 bin/makeprotseq
 bin/marscan
+bin/maskambignuc
+bin/maskambigprot
 bin/maskfeat
 bin/maskseq
 bin/matcher
@@ -91,7 +103,10 @@ bin/needle
 bin/newcpgreport
 bin/newcpgseek
 bin/newseq
+bin/nohtml
 bin/noreturn
+bin/nospace
+bin/notab
 bin/notseq
 bin/nthseq
 bin/octanol
@@ -143,6 +158,8 @@ bin/sigcleave
 bin/silent
 bin/sirna
 bin/sixpack
+bin/sizeseq
+bin/skipredundant
 bin/skipseq
 bin/splitter
 bin/stretcher
@@ -159,6 +176,7 @@ bin/tranalign
 bin/transeq
 bin/trimest
 bin/trimseq
+bin/trimspace
 bin/twofeat
 bin/union
 bin/vectorstrip
@@ -188,6 +206,8 @@ include/ajexcept.h
 include/ajfeat.h
 include/ajfeatdata.h
 include/ajfile.h
+include/ajfiledata.h
+include/ajfileio.h
 include/ajfmt.h
 include/ajgraph.h
 include/ajgraphstruct.h
@@ -279,11 +299,11 @@ include/pcreposix.h
 lib/libajax.a
 lib/libajax.la
 lib/libajax.so
-lib/libajax.so.5
+lib/libajax.so.6
 lib/libajaxg.a
 lib/libajaxg.la
 lib/libajaxg.so
-lib/libajaxg.so.5
+lib/libajaxg.so.6
 lib/libeplplot.a
 lib/libeplplot.la
 lib/libeplplot.so
@@ -291,450 +311,7 @@ lib/libeplplot.so.5
 lib/libnucleus.a
 lib/libnucleus.la
 lib/libnucleus.so
-lib/libnucleus.so.5
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-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/abiview.1.abiview.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/abiview.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/acd_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/acdc.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/acdlog.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/acdpretty.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/acdtable.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/acdtrace.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/acdvalid.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/ajtest.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/alignment_consensus_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/alignment_differences_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/alignment_dot_plots_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/alignment_global_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/alignment_local_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/alignment_multiple_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/antigenic.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/backtranambig.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/backtranseq.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/banana.1.banana.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/banana.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/biosed.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/btwisted.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/cai.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/chaos.1.chaos.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/chaos.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/charge.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/checktrans.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/chips.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/cirdna.1.cirdna.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/cirdna.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/codcmp.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/codcopy.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/coderet.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/compseq.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/cons.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/cpgplot.1.cpgplot.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/cpgplot.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/cpgreport.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/cusp.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/cutgextract.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/cutseq.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/dan.2.dan.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/dan.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/dbiblast.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/dbifasta.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/dbiflat.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/dbigcg.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/dbxfasta.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/dbxflat.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/dbxgcg.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/degapseq.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/descseq.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/diffseq.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/digest.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/display_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/distmat.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/dotmatcher.1.dotmatcher.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/dotmatcher.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/dotpath.1.dotpath.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/dotpath.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/dottup.1.dottup.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/dottup.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/dreg.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/edialign.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/einverted.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/emboss_icon.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/emboss_icon.jpg
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/embossdata.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/embossversion.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/emma.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/emowse.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/entret.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/enzyme_kinetics_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/epestfind.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/eprimer3.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/equicktandem.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/est2genome.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/etandem.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/extractfeat.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/extractseq.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/feature_tables_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/findkm.1.findkm.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/findkm.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/freak.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/fuzznuc.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/fuzzpro.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/fuzztran.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/garnier.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/geecee.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/getorf.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/groups.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/helixturnhelix.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/hmm_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/hmoment.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/iep.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/index.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/infoalign.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/information_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/infoseq.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/isochore.1.isochore.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/isochore.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/jembossctl.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/lindna.1.lindna.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/lindna.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/listor.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/makenucseq.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/makeprotseq.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/marscan.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/maskfeat.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/maskseq.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/matcher.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/megamerger.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/menus_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/merger.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/msbar.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/mwcontam.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/mwfilter.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/needle.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/newcpgreport.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/newcpgseek.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/newseq.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/noreturn.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/notseq.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/nthseq.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/nucleic_2d_structure_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/nucleic_codon_usage_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/nucleic_codon_usage_nucleic_gene_finding_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/nucleic_composition_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/nucleic_cpg_islands_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/nucleic_gene_finding_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/nucleic_motifs_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/nucleic_mutation_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/nucleic_primers_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/nucleic_profiles_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/nucleic_repeats_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/nucleic_restriction_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/nucleic_transcription_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/nucleic_translation_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/octanol.1.octanol.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/octanol.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/oddcomp.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/palindrome.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/pasteseq.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/patmatdb.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/patmatmotifs.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/pepcoil.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/pepinfo.1.pepinfo.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/pepinfo.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/pepnet.1.pepnet.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/pepnet.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/pepstats.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/pepwheel.1.pepwheel.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/pepwheel.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/pepwindow.1.pepwindow.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/pepwindow.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/pepwindowall.1.pepwindowall.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/pepwindowall.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/phylogeny_consensus_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/phylogeny_continuous_characters_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/phylogeny_discrete_characters_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/phylogeny_distance_matrix_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/phylogeny_gene_frequencies_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/phylogeny_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/phylogeny_molecular_sequence_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/phylogeny_tree_drawing_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/plotcon.1.plotcon.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/plotcon.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/plotorf.1.plotorf.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/plotorf.2.plotorf.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/plotorf.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/polydot.1.polydot.gif
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/polydot.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/preg.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/prettyplot.1.prettyplot.gif
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-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/prettyplot.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/prettyseq.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/primersearch.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/printsextract.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/profit.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/prophecy.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/prophet.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/prosextract.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/protein_2d_structure_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/protein_3d_structure_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/protein_composition_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/protein_motifs_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/protein_mutation_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/protein_profiles_group.html
-%%PORTDOCS%%%%DOCSDIR%%/html/emboss/apps/protein_sequence_alignment_group.html
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+%%DOCSDIR%%/tutorials/emboss-talk.ppt
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@@ -1644,6 +1725,8 @@ lib/libnucleus.so.5
 %%DATADIR%%/test/data/nucseq.pat
 %%DATADIR%%/test/data/nucsimple.pat
 %%DATADIR%%/test/data/opsd.msf
+%%DATADIR%%/test/data/paamir.gff
+%%DATADIR%%/test/data/paamir.gff3
 %%DATADIR%%/test/data/paamir.pep
 %%DATADIR%%/test/data/pax6_cdna.fasta
 %%DATADIR%%/test/data/prints.test
@@ -1783,31 +1866,29 @@ lib/libnucleus.so.5
 %%DATADIR%%/test/testdb/division.lkp
 %%DATADIR%%/test/testdb/entrynam.idx
 %%DATADIR%%/test/testdb/testdb.fasta
+@dirrm bin
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 @dirrm include
+@dirrm lib
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-@dirrm %%DATADIR%%/test/embl
-@dirrm %%DATADIR%%/test/genbank
-@dirrm %%DATADIR%%/test/pir
-@dirrm %%DATADIR%%/test/swiss
-@dirrm %%DATADIR%%/test/swnew
-@dirrm %%DATADIR%%/test/testdb
-@dirrm %%DATADIR%%/test
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/manuals
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/html/emboss/apps
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/html/emboss
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/html
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs/text
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/tutorials
-%%PORTDOCS%%@dirrm %%DOCSDIR%%
+@dirrm %%DATADIR%%/data/AAINDEX
+@dirrm %%DATADIR%%/data/CODONS
+@dirrm %%DATADIR%%/data/JASPAR_CNE
+@dirrm %%DATADIR%%/data/JASPAR_CORE
+@dirrm %%DATADIR%%/data/JASPAR_FAM
+@dirrm %%DATADIR%%/data/JASPAR_PHYLOFACTS
+@dirrm %%DATADIR%%/data/JASPAR_POLII
+@dirrm %%DATADIR%%/data/JASPAR_SPLICE
+@dirrm %%DATADIR%%/data/PRINTS
+@dirrm %%DATADIR%%/data/PROSITE
+@dirrm %%DATADIR%%/data/REBASE
+@dirrm %%DATADIR%%/data
+@dirrm %%DOCSDIR%%/manuals
+@dirrm %%DOCSDIR%%/programs/html
+@dirrm %%DOCSDIR%%/programs/text
+@dirrm %%DOCSDIR%%/programs
+@dirrm %%DOCSDIR%%/tutorials
+@dirrm %%DOCSDIR%%
 @dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/filetree
 @dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form
 @dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/sequenceChooser
@@ -1824,8 +1905,8 @@ lib/libnucleus.so.5
 @dirrm %%DATADIR%%/jemboss/images
 @dirrm %%DATADIR%%/jemboss/lib/axis
 @dirrm %%DATADIR%%/jemboss/lib
-@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/editor
 @dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/draw
+@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/editor
 @dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/graphics
 @dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree
 @dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui/form
@@ -1843,8 +1924,13 @@ lib/libnucleus.so.5
 @dirrm %%DATADIR%%/jemboss/resources
 @dirrm %%DATADIR%%/jemboss/utils
 @dirrm %%DATADIR%%/jemboss
-@dirrmtry %%DATADIR%%
-@dirrmtry bin
-@dirrmtry include
-@dirrmtry lib
+@dirrm %%DATADIR%%/test/data
+@dirrm %%DATADIR%%/test/embl
+@dirrm %%DATADIR%%/test/genbank
+@dirrm %%DATADIR%%/test/pir
+@dirrm %%DATADIR%%/test/swiss
+@dirrm %%DATADIR%%/test/swnew
+@dirrm %%DATADIR%%/test/testdb
+@dirrm %%DATADIR%%/test
+@dirrm %%DATADIR%%
 @dirrmtry share
diff --git a/french/verbiste/Makefile b/french/verbiste/Makefile
index 5a9576a5d0ea..1ba7f8d3922e 100644
--- a/french/verbiste/Makefile
+++ b/french/verbiste/Makefile
@@ -6,8 +6,7 @@
 #
 
 PORTNAME=	verbiste
-PORTVERSION=	0.1.23
-PORTREVISION=	2
+PORTVERSION=	0.1.24
 CATEGORIES=	french textproc
 MASTER_SITES=	http://perso.b2b2c.ca/sarrazip/dev/
 
diff --git a/french/verbiste/distinfo b/french/verbiste/distinfo
index a5b0d51caa08..1e7d79b8d56e 100644
--- a/french/verbiste/distinfo
+++ b/french/verbiste/distinfo
@@ -1,3 +1,3 @@
-MD5 (verbiste-0.1.23.tar.gz) = 8d978ae48c23295582c2eeec42a3d595
-SHA256 (verbiste-0.1.23.tar.gz) = fee17156f573bb433da1073811ffe5ce64f77dfb5c3797a500c42a7ced503e42
-SIZE (verbiste-0.1.23.tar.gz) = 640751
+MD5 (verbiste-0.1.24.tar.gz) = bb4aef607fe0798ac33a9cab0e89abaf
+SHA256 (verbiste-0.1.24.tar.gz) = d322e811f8c1bfed0bb6790eb4ec3338ab4255fc65380b009b8908d29abb1f8f
+SIZE (verbiste-0.1.24.tar.gz) = 641340