This is a port of a molecular file format converter, babel.

Babel is developed by Dolata Group, Department of Chemistry,
University of Arizona and Ohio State University.
PR:		ports/5215
Submitted by:	Frank Chen Hsiung Chan <frankch@waru.life.nthu.edu.tw>

7 files changed, 95 insertions, 0 deletions

diff --git a/biology/babel/Makefile b/biology/babel/Makefile
new file mode 100644
index 000000000000..c6346cd588a3
--- /dev/null
+++ b/biology/babel/Makefile
@@ -0,0 +1,19 @@
+# New ports collection Makefile for: babel
+# Version required:     1.6
+# Date created:         Dec 4 1997
+# Whom:                 frankch@waru.life.nthu.edu.tw
+#
+# $Id$
+#
+
+DISTNAME=	babel-1.6
+CATEGORIES=     biology
+MASTER_SITES=	ftp://ccl.osc.edu/pub/chemistry/software/MAC/babel/
+EXTRACT_SUFX=	.tar.Z
+
+MAINTAINER=     frankch@waru.life.nthu.edu.tw
+
+post-install:
+		@ ${CAT} ${PKGDIR}/INSTALL
+
+.include <bsd.port.mk>
diff --git a/biology/babel/distinfo b/biology/babel/distinfo
new file mode 100644
index 000000000000..bcd232fdeacb
--- /dev/null
+++ b/biology/babel/distinfo
@@ -0,0 +1 @@
+MD5 (babel-1.6.tar.Z) = 101a5dc4858ecacac123571db52b272e
diff --git a/biology/babel/files/patch-aa b/biology/babel/files/patch-aa
new file mode 100644
index 000000000000..2cbbdf919829
--- /dev/null
+++ b/biology/babel/files/patch-aa
@@ -0,0 +1,24 @@
+--- Makefile.orig	Tue Jan 21 23:53:05 1997
++++ Makefile	Sat Dec 20 05:12:51 1997
+@@ -1,6 +1,6 @@
+-CFLAGS        = -O 
++DEST          = /usr/local/share/babel
+ 
+-LIBFLAGS      = -O -DLIBRARY 
++LIBFLAGS      = -DLIBRARY 
+ 
+ CC	      = cc
+ 
+@@ -334,7 +334,11 @@
+ index:;		ctags -wx $(HDRS) $(SRCS)
+ 
+ install:	$(PROGRAM)
+-		install -s $(PROGRAM) $(DEST)
++		install -s $(PROGRAM) /usr/local/bin/$(PROGRAM)
++		install -d -o bin -g bin $(DEST)
++		install -c -o bin -g bin README.1ST $(DEST)
++		install -c -o bin -g bin element.lis new.lis $(DEST)
++		install -c -o bin -g bin quanta.lis types.lis $(DEST)
+ 
+ print:;		$(PRINT) $(HDRS) $(SRCS)
+ 
diff --git a/biology/babel/files/patch-ab b/biology/babel/files/patch-ab
new file mode 100644
index 000000000000..4770277b67e8
--- /dev/null
+++ b/biology/babel/files/patch-ab
@@ -0,0 +1,37 @@
+--- menus.c.orig	Thu Dec  4 20:20:28 1997
++++ menus.c	Thu Dec  4 20:21:46 1997
+@@ -63,9 +63,9 @@
+     }
+   }
+   printf("Input file name : ");
+-  gets(InfileName);
++  fgets(InfileName, BUFF_SIZE - 1, stdin);
+   printf("Keywords : ");
+-  gets(InputKeywords);
++  fgets(InputKeywords, BUFF_SIZE - 1, stdin);
+ 
+   if (strlen(InputKeywords) < 1)
+     strcpy(InputKeywords,"KEYWORDS GO HERE");
+@@ -108,11 +108,11 @@
+     }
+   }
+   printf("Output file name : ");
+-  gets(OutfileName);
++  fgets(OutfileName, BUFF_SIZE - 1, stdin);
+   if (has_keywords)
+   {
+     printf("Keywords : ");
+-    gets(OutputKeywords);
++    fgets(OutputKeywords, BUFF_SIZE - 1, stdin);
+     if (strlen(OutputKeywords) < 1)
+       strcpy(OutputKeywords,"KEYWORDS GO HERE");
+   }
+@@ -167,7 +167,7 @@
+   while (done == FALSE)
+   {
+     printf("Choice : ");
+-    gets(choice_string);
++    fgets(choice_string, 99, stdin);
+     for (i = 0; i < (int) strlen(choice_string); i++)
+     {
+       if (!isdigit(choice_string[i]))
diff --git a/biology/babel/pkg-comment b/biology/babel/pkg-comment
new file mode 100644
index 000000000000..a7633be03ae8
--- /dev/null
+++ b/biology/babel/pkg-comment
@@ -0,0 +1 @@
+Conversion program among various molecular file formats.
diff --git a/biology/babel/pkg-descr b/biology/babel/pkg-descr
new file mode 100644
index 000000000000..7823c5be345e
--- /dev/null
+++ b/biology/babel/pkg-descr
@@ -0,0 +1,6 @@
+Babel is a conversion program which is able to convert among dozens of
+molecular file formats. 
+Babel is developed by Dolata Group, Department of Chemistry,
+Arizona University and Ohio State University.
+The homepage of babel could be found at
+    http://mercury.aichem.arizona.edu/babel.html
diff --git a/biology/babel/pkg-plist b/biology/babel/pkg-plist
new file mode 100644
index 000000000000..9acff72a342f
--- /dev/null
+++ b/biology/babel/pkg-plist
@@ -0,0 +1,7 @@
+bin/babel
+share/babel/README.1ST
+share/babel/element.lis
+share/babel/new.lis
+share/babel/quanta.lis
+share/babel/types.lis
+@dirrm share/babel